Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt smtA and SO0559 are separated by 394 nucleotides SO0559 and fhs are separated by 435 nucleotides
SO0558: smtA - smtA protein (NCBI ptt file), at 578,052 to 578,834
smtA
SO0559: SO0559 - MaoC domain protein (NCBI ptt file), at 579,229 to 580,059
SO0559
SO0560: fhs - formate--tetrahydrofolate ligase (NCBI ptt file), at 580,495 to 582,207
fhs
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 578.246 kb on + strand, within smtA at 578.352 kb on + strand, within smtA at 578.463 kb on + strand, within smtA at 578.484 kb on - strand, within smtA at 578.494 kb on - strand, within smtA at 578.531 kb on - strand, within smtA at 578.532 kb on - strand, within smtA at 578.569 kb on - strand, within smtA at 578.595 kb on + strand, within smtA at 578.717 kb on + strand, within smtA at 578.745 kb on + strand, within smtA at 578.753 kb on - strand, within smtA at 578.760 kb on + strand at 578.768 kb on - strand at 578.775 kb on - strand at 578.836 kb on + strand at 578.836 kb on + strand at 578.836 kb on + strand at 578.846 kb on + strand at 578.846 kb on + strand at 578.860 kb on - strand at 578.864 kb on - strand at 578.866 kb on + strand at 578.876 kb on + strand at 578.884 kb on - strand at 578.987 kb on - strand at 579.005 kb on + strand at 579.005 kb on + strand at 579.005 kb on + strand at 579.013 kb on - strand at 579.013 kb on - strand at 579.036 kb on + strand at 579.043 kb on - strand at 579.135 kb on - strand at 579.138 kb on + strand at 579.193 kb on + strand at 579.369 kb on - strand, within SO0559 at 579.477 kb on + strand, within SO0559 at 579.477 kb on + strand, within SO0559 at 579.485 kb on - strand, within SO0559 at 579.554 kb on - strand, within SO0559 at 579.594 kb on - strand, within SO0559 at 579.594 kb on - strand, within SO0559 at 579.636 kb on - strand, within SO0559 at 579.645 kb on + strand, within SO0559 at 579.695 kb on + strand, within SO0559 at 579.703 kb on - strand, within SO0559 at 579.703 kb on - strand, within SO0559 at 579.759 kb on - strand, within SO0559 at 579.829 kb on + strand, within SO0559 at 579.837 kb on - strand, within SO0559 at 579.841 kb on + strand, within SO0559 at 579.908 kb on + strand, within SO0559 at 579.936 kb on - strand, within SO0559 at 579.936 kb on - strand, within SO0559 at 579.936 kb on - strand, within SO0559 at 580.053 kb on + strand at 580.061 kb on - strand at 580.061 kb on - strand at 580.281 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.313 kb on - strand at 580.313 kb on - strand at 580.313 kb on - strand at 580.313 kb on - strand at 580.313 kb on - strand at 580.320 kb on + strand at 580.340 kb on + strand at 580.346 kb on - strand at 580.346 kb on - strand at 580.346 kb on - strand at 580.346 kb on - strand at 580.346 kb on - strand at 580.622 kb on + strand at 580.624 kb on + strand at 580.632 kb on + strand at 580.632 kb on + strand at 580.640 kb on - strand at 580.697 kb on - strand, within fhs at 580.709 kb on - strand, within fhs at 580.731 kb on - strand, within fhs at 580.744 kb on - strand, within fhs at 580.749 kb on + strand, within fhs at 580.774 kb on + strand, within fhs at 580.893 kb on + strand, within fhs at 580.928 kb on + strand, within fhs at 580.962 kb on + strand, within fhs at 580.962 kb on + strand, within fhs at 580.984 kb on + strand, within fhs at 580.992 kb on - strand, within fhs at 581.007 kb on + strand, within fhs
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 578,246 + smtA SO0558 0.25 +0.5 578,352 + smtA SO0558 0.38 -1.0 578,463 + smtA SO0558 0.52 -0.8 578,484 - smtA SO0558 0.55 -1.1 578,494 - smtA SO0558 0.56 -1.9 578,531 - smtA SO0558 0.61 -0.4 578,532 - smtA SO0558 0.61 -1.9 578,569 - smtA SO0558 0.66 -0.3 578,595 + smtA SO0558 0.69 +0.4 578,717 + smtA SO0558 0.85 +0.2 578,745 + smtA SO0558 0.89 -0.5 578,753 - smtA SO0558 0.90 -1.0 578,760 + +0.4 578,768 - -0.2 578,775 - +0.3 578,836 + -1.1 578,836 + +1.1 578,836 + -0.9 578,846 + +0.2 578,846 + +0.1 578,860 - +0.5 578,864 - -0.1 578,866 + -0.6 578,876 + +0.4 578,884 - -0.1 578,987 - -0.2 579,005 + +0.5 579,005 + +0.7 579,005 + +1.5 579,013 - +0.8 579,013 - +1.1 579,036 + -1.2 579,043 - -0.8 579,135 - -1.1 579,138 + -1.7 579,193 + -3.0 579,369 - SO0559 0.17 -0.6 579,477 + SO0559 0.30 -3.0 579,477 + SO0559 0.30 -1.1 579,485 - SO0559 0.31 -1.1 579,554 - SO0559 0.39 -0.5 579,594 - SO0559 0.44 -2.3 579,594 - SO0559 0.44 -0.3 579,636 - SO0559 0.49 +0.0 579,645 + SO0559 0.50 -0.9 579,695 + SO0559 0.56 -1.7 579,703 - SO0559 0.57 -3.0 579,703 - SO0559 0.57 -2.1 579,759 - SO0559 0.64 +0.2 579,829 + SO0559 0.72 -1.7 579,837 - SO0559 0.73 -1.5 579,841 + SO0559 0.74 -2.1 579,908 + SO0559 0.82 -1.4 579,936 - SO0559 0.85 -1.7 579,936 - SO0559 0.85 -1.3 579,936 - SO0559 0.85 +0.9 580,053 + -0.5 580,061 - -0.5 580,061 - -2.0 580,281 + +1.4 580,305 + +0.7 580,305 + -0.3 580,305 + +0.2 580,305 + +1.0 580,305 + +0.3 580,305 + +0.7 580,305 + +1.1 580,305 + +0.5 580,305 + +0.5 580,313 - +1.1 580,313 - +0.9 580,313 - +0.2 580,313 - -0.8 580,313 - -0.8 580,320 + -0.2 580,340 + +1.4 580,346 - -0.1 580,346 - +0.1 580,346 - -0.4 580,346 - +0.5 580,346 - -0.2 580,622 + -0.5 580,624 + -0.7 580,632 + -0.4 580,632 + -0.4 580,640 - +0.3 580,697 - fhs SO0560 0.12 +0.2 580,709 - fhs SO0560 0.12 -0.1 580,731 - fhs SO0560 0.14 -0.7 580,744 - fhs SO0560 0.15 -1.0 580,749 + fhs SO0560 0.15 +0.4 580,774 + fhs SO0560 0.16 -0.4 580,893 + fhs SO0560 0.23 -0.3 580,928 + fhs SO0560 0.25 -0.5 580,962 + fhs SO0560 0.27 -0.6 580,962 + fhs SO0560 0.27 -1.3 580,984 + fhs SO0560 0.29 -0.5 580,992 - fhs SO0560 0.29 +0.2 581,007 + fhs SO0560 0.30 -1.0
Or see this region's nucleotide sequence