Strain Fitness in Shewanella oneidensis MR-1 around SO0534

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntarsR and SO0533 are separated by 35 nucleotidesSO0533 and SO0534 are separated by 9 nucleotidesSO0534 and SO0535 are separated by 41 nucleotides SO0532: arsR - arsenical resistence operon repressor (NCBI ptt file), at 553,907 to 554,251 arsR SO0533: SO0533 - arsenate reductase, putative (NCBI ptt file), at 554,287 to 554,802 SO0533 SO0534: SO0534 - arsenical pump membrane protein, putative (NCBI ptt file), at 554,812 to 555,831 SO0534 SO0535: SO0535 - conserved hypothetical protein (NCBI ptt file), at 555,873 to 556,868 SO0535 Position (kb) 554 555 556Strain fitness (log2 ratio) -2 -1 0 1 2 3at 553.959 kb on + strand, within arsRat 554.125 kb on + strand, within arsRat 554.125 kb on + strand, within arsRat 554.133 kb on - strand, within arsRat 554.133 kb on - strand, within arsRat 554.277 kb on + strandat 554.280 kb on - strandat 554.386 kb on - strand, within SO0533at 554.407 kb on + strand, within SO0533at 554.500 kb on + strand, within SO0533at 554.522 kb on - strand, within SO0533at 554.558 kb on - strand, within SO0533at 554.568 kb on - strand, within SO0533at 554.626 kb on + strand, within SO0533at 554.636 kb on + strand, within SO0533at 554.636 kb on + strand, within SO0533at 554.644 kb on - strand, within SO0533at 554.644 kb on - strand, within SO0533at 554.713 kb on - strand, within SO0533at 554.714 kb on - strand, within SO0533at 554.769 kb on - strandat 554.848 kb on + strandat 554.975 kb on - strand, within SO0534at 555.125 kb on + strand, within SO0534at 555.176 kb on + strand, within SO0534at 555.183 kb on + strand, within SO0534at 555.184 kb on - strand, within SO0534at 555.191 kb on + strand, within SO0534at 555.191 kb on - strand, within SO0534at 555.199 kb on - strand, within SO0534at 555.219 kb on + strand, within SO0534at 555.285 kb on - strand, within SO0534at 555.437 kb on - strand, within SO0534at 555.458 kb on + strand, within SO0534at 555.459 kb on + strand, within SO0534at 555.459 kb on + strand, within SO0534at 555.459 kb on + strand, within SO0534at 555.467 kb on - strand, within SO0534at 555.467 kb on - strand, within SO0534at 555.467 kb on - strand, within SO0534at 555.535 kb on - strand, within SO0534at 555.718 kb on + strand, within SO0534at 555.757 kb on + strandat 555.942 kb on + strandat 555.950 kb on - strandat 555.950 kb on - strandat 555.950 kb on - strandat 555.950 kb on - strandat 555.950 kb on - strandat 556.047 kb on - strand, within SO0535at 556.047 kb on - strand, within SO0535at 556.052 kb on - strand, within SO0535at 556.256 kb on - strand, within SO0535at 556.257 kb on + strand, within SO0535at 556.308 kb on - strand, within SO0535at 556.308 kb on - strand, within SO0535at 556.308 kb on - strand, within SO0535at 556.364 kb on + strand, within SO0535at 556.374 kb on + strand, within SO0535at 556.413 kb on + strand, within SO0535at 556.421 kb on + strand, within SO0535at 556.436 kb on + strand, within SO0535at 556.444 kb on - strand, within SO0535at 556.522 kb on + strand, within SO0535at 556.522 kb on + strand, within SO0535at 556.527 kb on + strand, within SO0535at 556.534 kb on + strand, within SO0535at 556.547 kb on - strand, within SO0535at 556.552 kb on - strand, within SO0535at 556.584 kb on + strand, within SO0535at 556.584 kb on + strand, within SO0535at 556.586 kb on - strand, within SO0535at 556.590 kb on + strand, within SO0535at 556.590 kb on + strand, within SO0535at 556.635 kb on - strand, within SO0535at 556.729 kb on + strand, within SO0535at 556.796 kb on + strandat 556.804 kb on - strandat 556.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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553,959 + arsR SO0532 0.15 -0.5
554,125 + arsR SO0532 0.63 +0.6
554,125 + arsR SO0532 0.63 +0.5
554,133 - arsR SO0532 0.66 +0.9
554,133 - arsR SO0532 0.66 +0.7
554,277 + -0.4
554,280 - +0.5
554,386 - SO0533 0.19 +0.1
554,407 + SO0533 0.23 +0.3
554,500 + SO0533 0.41 -0.0
554,522 - SO0533 0.46 +0.6
554,558 - SO0533 0.53 +0.3
554,568 - SO0533 0.54 +0.4
554,626 + SO0533 0.66 -0.7
554,636 + SO0533 0.68 -0.2
554,636 + SO0533 0.68 +0.9
554,644 - SO0533 0.69 +0.2
554,644 - SO0533 0.69 -0.1
554,713 - SO0533 0.83 +0.9
554,714 - SO0533 0.83 +0.1
554,769 - +0.2
554,848 + -0.4
554,975 - SO0534 0.16 -1.3
555,125 + SO0534 0.31 -0.4
555,176 + SO0534 0.36 -0.1
555,183 + SO0534 0.36 -0.8
555,184 - SO0534 0.36 -0.1
555,191 + SO0534 0.37 -0.8
555,191 - SO0534 0.37 +0.1
555,199 - SO0534 0.38 +0.2
555,219 + SO0534 0.40 -0.8
555,285 - SO0534 0.46 -2.5
555,437 - SO0534 0.61 -0.5
555,458 + SO0534 0.63 +0.9
555,459 + SO0534 0.63 -0.4
555,459 + SO0534 0.63 +0.9
555,459 + SO0534 0.63 -0.5
555,467 - SO0534 0.64 -1.0
555,467 - SO0534 0.64 -0.4
555,467 - SO0534 0.64 +0.7
555,535 - SO0534 0.71 +0.7
555,718 + SO0534 0.89 +0.1
555,757 + +1.0
555,942 + -0.1
555,950 - +0.2
555,950 - -0.4
555,950 - -1.1
555,950 - -2.1
555,950 - -0.8
556,047 - SO0535 0.17 +0.3
556,047 - SO0535 0.17 -1.1
556,052 - SO0535 0.18 -0.9
556,256 - SO0535 0.38 -0.8
556,257 + SO0535 0.39 -0.5
556,308 - SO0535 0.44 +0.9
556,308 - SO0535 0.44 +0.4
556,308 - SO0535 0.44 -0.1
556,364 + SO0535 0.49 -0.1
556,374 + SO0535 0.50 -0.6
556,413 + SO0535 0.54 -0.0
556,421 + SO0535 0.55 +0.9
556,436 + SO0535 0.57 -0.4
556,444 - SO0535 0.57 +2.9
556,522 + SO0535 0.65 +1.0
556,522 + SO0535 0.65 -1.5
556,527 + SO0535 0.66 -0.7
556,534 + SO0535 0.66 -1.0
556,547 - SO0535 0.68 -0.4
556,552 - SO0535 0.68 -0.6
556,584 + SO0535 0.71 -0.5
556,584 + SO0535 0.71 -0.7
556,586 - SO0535 0.72 -0.3
556,590 + SO0535 0.72 -2.1
556,590 + SO0535 0.72 +0.1
556,635 - SO0535 0.77 -0.6
556,729 + SO0535 0.86 -0.1
556,796 + -0.9
556,804 - +0.4
556,804 - -0.4

Or see this region's nucleotide sequence