Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0506 and SO0508 are separated by 128 nucleotides SO0508 and SO0508.1 are separated by 302 nucleotides SO0508.1 and SO0510 overlap by 54 nucleotides
SO0506: SO0506 - conserved hypothetical protein TIGR00148 (NCBI ptt file), at 532,473 to 533,939
SO0506
SO0508: SO0508 - hypothetical protein (NCBI ptt file), at 534,068 to 534,856
SO0508
SO0508.1: SO0508.1 - hypothetical Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit (NCBI ptt file), at 535,159 to 535,374
SO0508.1
SO0510: SO0510 - oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file), at 535,321 to 535,998
SO0510
Position (kb) 534
535 Strain fitness (log2 ratio) -2
-1
0
1
2 at 533.966 kb on - strand at 534.003 kb on - strand at 534.108 kb on + strand at 534.197 kb on - strand, within SO0508 at 534.393 kb on + strand, within SO0508 at 534.401 kb on - strand, within SO0508 at 534.537 kb on - strand, within SO0508 at 534.570 kb on - strand, within SO0508 at 534.606 kb on + strand, within SO0508 at 534.644 kb on - strand, within SO0508 at 534.678 kb on - strand, within SO0508 at 534.731 kb on + strand, within SO0508 at 534.759 kb on - strand, within SO0508 at 535.202 kb on - strand, within SO0508.1 at 535.249 kb on + strand, within SO0508.1 at 535.264 kb on - strand, within SO0508.1 at 535.294 kb on - strand, within SO0508.1 at 535.349 kb on + strand at 535.354 kb on + strand at 535.362 kb on - strand at 535.362 kb on - strand at 535.388 kb on - strand at 535.520 kb on - strand, within SO0510 at 535.545 kb on - strand, within SO0510 at 535.562 kb on + strand, within SO0510 at 535.566 kb on + strand, within SO0510 at 535.606 kb on - strand, within SO0510 at 535.700 kb on + strand, within SO0510 at 535.708 kb on - strand, within SO0510 at 535.708 kb on - strand, within SO0510 at 535.710 kb on + strand, within SO0510 at 535.741 kb on - strand, within SO0510 at 535.752 kb on - strand, within SO0510 at 535.759 kb on + strand, within SO0510
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 533,966 - +0.3 534,003 - -1.0 534,108 + +1.9 534,197 - SO0508 0.16 +0.1 534,393 + SO0508 0.41 +1.0 534,401 - SO0508 0.42 -0.7 534,537 - SO0508 0.59 -0.4 534,570 - SO0508 0.64 -1.7 534,606 + SO0508 0.68 -0.1 534,644 - SO0508 0.73 +0.5 534,678 - SO0508 0.77 +0.2 534,731 + SO0508 0.84 +0.3 534,759 - SO0508 0.88 +0.4 535,202 - SO0508.1 0.20 -1.1 535,249 + SO0508.1 0.42 -0.6 535,264 - SO0508.1 0.49 +0.0 535,294 - SO0508.1 0.62 -1.2 535,349 + -0.9 535,354 + -1.2 535,362 - -1.3 535,362 - +0.2 535,388 - -0.0 535,520 - SO0510 0.29 -0.4 535,545 - SO0510 0.33 -0.7 535,562 + SO0510 0.36 -0.2 535,566 + SO0510 0.36 -1.9 535,606 - SO0510 0.42 +0.1 535,700 + SO0510 0.56 -0.1 535,708 - SO0510 0.57 +0.0 535,708 - SO0510 0.57 +0.8 535,710 + SO0510 0.57 -0.2 535,741 - SO0510 0.62 -0.6 535,752 - SO0510 0.64 -0.5 535,759 + SO0510 0.65 -0.1
Or see this region's nucleotide sequence