Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fre and SO0505 are separated by 167 nucleotides SO0505 and SO0506 are separated by 13 nucleotides SO0506 and SO0508 are separated by 128 nucleotides
SO0504: fre - NAD(P)H-flavin reductase (NCBI ptt file), at 530,850 to 531,548
fre
SO0505: SO0505 - conserved domain protein (NCBI ptt file), at 531,716 to 532,459
SO0505
SO0506: SO0506 - conserved hypothetical protein TIGR00148 (NCBI ptt file), at 532,473 to 533,939
SO0506
SO0508: SO0508 - hypothetical protein (NCBI ptt file), at 534,068 to 534,856
SO0508
Position (kb) 532
533
534 Strain fitness (log2 ratio) -2
-1
0
1
2 at 531.512 kb on + strand at 531.734 kb on + strand at 531.744 kb on + strand at 531.752 kb on - strand at 531.752 kb on - strand at 531.752 kb on - strand at 531.791 kb on + strand, within SO0505 at 531.799 kb on - strand, within SO0505 at 531.837 kb on - strand, within SO0505 at 531.880 kb on + strand, within SO0505 at 531.962 kb on + strand, within SO0505 at 531.970 kb on - strand, within SO0505 at 531.970 kb on - strand, within SO0505 at 531.972 kb on + strand, within SO0505 at 532.077 kb on + strand, within SO0505 at 532.077 kb on + strand, within SO0505 at 532.077 kb on + strand, within SO0505 at 532.077 kb on + strand, within SO0505 at 532.077 kb on + strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.113 kb on + strand, within SO0505 at 532.216 kb on - strand, within SO0505 at 532.216 kb on - strand, within SO0505 at 532.227 kb on - strand, within SO0505 at 532.269 kb on - strand, within SO0505 at 532.305 kb on + strand, within SO0505 at 532.313 kb on - strand, within SO0505 at 532.416 kb on + strand at 532.424 kb on - strand at 532.424 kb on - strand at 532.424 kb on - strand at 532.436 kb on - strand at 532.490 kb on - strand at 532.490 kb on - strand at 532.490 kb on - strand at 532.500 kb on - strand at 533.966 kb on - strand at 534.003 kb on - strand at 534.108 kb on + strand at 534.197 kb on - strand, within SO0508 at 534.393 kb on + strand, within SO0508 at 534.401 kb on - strand, within SO0508 at 534.537 kb on - strand, within SO0508 at 534.570 kb on - strand, within SO0508 at 534.606 kb on + strand, within SO0508 at 534.644 kb on - strand, within SO0508 at 534.678 kb on - strand, within SO0508 at 534.731 kb on + strand, within SO0508 at 534.759 kb on - strand, within SO0508
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 531,512 + -2.6 531,734 + -1.0 531,744 + -0.5 531,752 - -2.7 531,752 - -0.8 531,752 - +0.4 531,791 + SO0505 0.10 -1.7 531,799 - SO0505 0.11 +0.5 531,837 - SO0505 0.16 -0.4 531,880 + SO0505 0.22 -1.6 531,962 + SO0505 0.33 -1.4 531,970 - SO0505 0.34 -0.2 531,970 - SO0505 0.34 -0.1 531,972 + SO0505 0.34 -0.3 532,077 + SO0505 0.49 -0.1 532,077 + SO0505 0.49 +0.4 532,077 + SO0505 0.49 -0.1 532,077 + SO0505 0.49 +0.3 532,077 + SO0505 0.49 +0.1 532,085 - SO0505 0.50 +1.3 532,085 - SO0505 0.50 -1.0 532,085 - SO0505 0.50 +0.4 532,085 - SO0505 0.50 +0.9 532,085 - SO0505 0.50 -1.4 532,085 - SO0505 0.50 +0.3 532,085 - SO0505 0.50 -0.8 532,085 - SO0505 0.50 +0.0 532,113 + SO0505 0.53 -2.6 532,216 - SO0505 0.67 +0.7 532,216 - SO0505 0.67 -0.3 532,227 - SO0505 0.69 -0.3 532,269 - SO0505 0.74 +0.9 532,305 + SO0505 0.79 -1.6 532,313 - SO0505 0.80 +0.1 532,416 + -0.8 532,424 - -0.4 532,424 - -0.7 532,424 - -0.9 532,436 - -0.2 532,490 - -0.1 532,490 - -0.2 532,490 - -0.3 532,500 - -0.1 533,966 - +0.3 534,003 - -1.0 534,108 + +1.9 534,197 - SO0508 0.16 +0.1 534,393 + SO0508 0.41 +1.0 534,401 - SO0508 0.42 -0.7 534,537 - SO0508 0.59 -0.4 534,570 - SO0508 0.64 -1.7 534,606 + SO0508 0.68 -0.1 534,644 - SO0508 0.73 +0.5 534,678 - SO0508 0.77 +0.2 534,731 + SO0508 0.84 +0.3 534,759 - SO0508 0.88 +0.4
Or see this region's nucleotide sequence