Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0503 and SO0503.1 overlap by 628 nucleotides SO0503.1 and fre are separated by 654 nucleotides fre and SO0505 are separated by 167 nucleotides SO0505 and SO0506 are separated by 13 nucleotides
SO0503: SO0503 - conserved hypothetical protein (NCBI ptt file), at 529,531 to 530,607
SO0503
SO0503.1: SO0503.1 - hypothetical protein (NCBI ptt file), at 529,980 to 530,195
SO0503.1
SO0504: fre - NAD(P)H-flavin reductase (NCBI ptt file), at 530,850 to 531,548
fre
SO0505: SO0505 - conserved domain protein (NCBI ptt file), at 531,716 to 532,459
SO0505
SO0506: SO0506 - conserved hypothetical protein TIGR00148 (NCBI ptt file), at 532,473 to 533,939
SO0506
Position (kb) 530
531
532 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 529.896 kb on - strand, within SO0503 at 530.001 kb on - strand at 530.093 kb on + strand at 530.093 kb on + strand at 530.093 kb on + strand at 530.093 kb on + strand at 530.093 kb on + strand at 530.123 kb on + strand at 530.124 kb on + strand at 530.197 kb on + strand, within SO0503 at 530.258 kb on + strand, within SO0503 at 530.272 kb on + strand, within SO0503 at 530.340 kb on - strand, within SO0503 at 530.350 kb on + strand, within SO0503 at 530.410 kb on - strand, within SO0503 at 530.422 kb on + strand, within SO0503 at 530.461 kb on + strand, within SO0503 at 530.577 kb on - strand at 530.649 kb on + strand at 530.649 kb on + strand at 530.659 kb on + strand at 530.659 kb on + strand at 530.660 kb on + strand at 530.667 kb on - strand at 530.668 kb on - strand at 530.683 kb on + strand at 530.696 kb on + strand at 530.704 kb on - strand at 530.870 kb on - strand at 530.875 kb on + strand at 530.883 kb on - strand at 530.926 kb on + strand, within fre at 531.071 kb on - strand, within fre at 531.111 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.136 kb on + strand, within fre at 531.144 kb on - strand, within fre at 531.144 kb on - strand, within fre at 531.144 kb on - strand, within fre at 531.144 kb on - strand, within fre at 531.144 kb on - strand, within fre at 531.151 kb on + strand, within fre at 531.187 kb on + strand, within fre at 531.228 kb on + strand, within fre at 531.247 kb on + strand, within fre at 531.255 kb on + strand, within fre at 531.263 kb on - strand, within fre at 531.334 kb on - strand, within fre at 531.512 kb on + strand at 531.734 kb on + strand at 531.744 kb on + strand at 531.752 kb on - strand at 531.752 kb on - strand at 531.752 kb on - strand at 531.791 kb on + strand, within SO0505 at 531.799 kb on - strand, within SO0505 at 531.837 kb on - strand, within SO0505 at 531.880 kb on + strand, within SO0505 at 531.962 kb on + strand, within SO0505 at 531.970 kb on - strand, within SO0505 at 531.970 kb on - strand, within SO0505 at 531.972 kb on + strand, within SO0505 at 532.077 kb on + strand, within SO0505 at 532.077 kb on + strand, within SO0505 at 532.077 kb on + strand, within SO0505 at 532.077 kb on + strand, within SO0505 at 532.077 kb on + strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.085 kb on - strand, within SO0505 at 532.113 kb on + strand, within SO0505 at 532.216 kb on - strand, within SO0505 at 532.216 kb on - strand, within SO0505 at 532.227 kb on - strand, within SO0505 at 532.269 kb on - strand, within SO0505 at 532.305 kb on + strand, within SO0505 at 532.313 kb on - strand, within SO0505 at 532.416 kb on + strand at 532.424 kb on - strand at 532.424 kb on - strand at 532.424 kb on - strand at 532.436 kb on - strand at 532.490 kb on - strand at 532.490 kb on - strand at 532.490 kb on - strand at 532.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 529,896 - SO0503 0.34 -0.0 530,001 - -0.1 530,093 + +0.5 530,093 + -0.4 530,093 + -0.2 530,093 + +0.1 530,093 + -0.5 530,123 + -0.5 530,124 + +0.0 530,197 + SO0503 0.62 +0.1 530,258 + SO0503 0.68 +0.3 530,272 + SO0503 0.69 -1.3 530,340 - SO0503 0.75 -0.1 530,350 + SO0503 0.76 +0.7 530,410 - SO0503 0.82 -0.0 530,422 + SO0503 0.83 +0.4 530,461 + SO0503 0.86 +0.2 530,577 - +1.1 530,649 + -0.4 530,649 + +0.3 530,659 + +0.7 530,659 + +0.5 530,660 + +0.3 530,667 - +0.5 530,668 - +0.0 530,683 + +2.1 530,696 + -0.1 530,704 - +0.6 530,870 - -1.7 530,875 + -1.1 530,883 - -1.1 530,926 + fre SO0504 0.11 -1.9 531,071 - fre SO0504 0.32 -1.9 531,111 + fre SO0504 0.37 -1.8 531,136 + fre SO0504 0.41 +0.3 531,136 + fre SO0504 0.41 -2.9 531,136 + fre SO0504 0.41 -1.6 531,136 + fre SO0504 0.41 -4.0 531,136 + fre SO0504 0.41 -2.8 531,136 + fre SO0504 0.41 +0.3 531,144 - fre SO0504 0.42 -3.3 531,144 - fre SO0504 0.42 -1.7 531,144 - fre SO0504 0.42 -1.4 531,144 - fre SO0504 0.42 -0.8 531,144 - fre SO0504 0.42 -4.6 531,151 + fre SO0504 0.43 -2.6 531,187 + fre SO0504 0.48 -2.8 531,228 + fre SO0504 0.54 -1.3 531,247 + fre SO0504 0.57 -2.3 531,255 + fre SO0504 0.58 -4.6 531,263 - fre SO0504 0.59 -2.3 531,334 - fre SO0504 0.69 -2.3 531,512 + -2.6 531,734 + -1.0 531,744 + -0.5 531,752 - -2.7 531,752 - -0.8 531,752 - +0.4 531,791 + SO0505 0.10 -1.7 531,799 - SO0505 0.11 +0.5 531,837 - SO0505 0.16 -0.4 531,880 + SO0505 0.22 -1.6 531,962 + SO0505 0.33 -1.4 531,970 - SO0505 0.34 -0.2 531,970 - SO0505 0.34 -0.1 531,972 + SO0505 0.34 -0.3 532,077 + SO0505 0.49 -0.1 532,077 + SO0505 0.49 +0.4 532,077 + SO0505 0.49 -0.1 532,077 + SO0505 0.49 +0.3 532,077 + SO0505 0.49 +0.1 532,085 - SO0505 0.50 +1.3 532,085 - SO0505 0.50 -1.0 532,085 - SO0505 0.50 +0.4 532,085 - SO0505 0.50 +0.9 532,085 - SO0505 0.50 -1.4 532,085 - SO0505 0.50 +0.3 532,085 - SO0505 0.50 -0.8 532,085 - SO0505 0.50 +0.0 532,113 + SO0505 0.53 -2.6 532,216 - SO0505 0.67 +0.7 532,216 - SO0505 0.67 -0.3 532,227 - SO0505 0.69 -0.3 532,269 - SO0505 0.74 +0.9 532,305 + SO0505 0.79 -1.6 532,313 - SO0505 0.80 +0.1 532,416 + -0.8 532,424 - -0.4 532,424 - -0.7 532,424 - -0.9 532,436 - -0.2 532,490 - -0.1 532,490 - -0.2 532,490 - -0.3 532,500 - -0.1
Or see this region's nucleotide sequence