Strain Fitness in Shewanella oneidensis MR-1 around SO0497

Experiment: Gly-DL-Asp (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0496 and SO0497 are separated by 332 nucleotidesSO0497 and SO0499 are separated by 485 nucleotides SO0496: SO0496 - conserved hypothetical protein (NCBI ptt file), at 520,371 to 521,294 SO0496 SO0497: SO0497 - hypothetical protein (NCBI ptt file), at 521,627 to 523,588 SO0497 SO0499: SO0499 - hypothetical protein (NCBI ptt file), at 524,074 to 524,634 SO0499 Position (kb) 521 522 523 524Strain fitness (log2 ratio) -2 -1 0 1 2at 520.636 kb on + strand, within SO0496at 520.636 kb on + strand, within SO0496at 520.644 kb on - strand, within SO0496at 520.644 kb on - strand, within SO0496at 520.668 kb on - strand, within SO0496at 520.677 kb on + strand, within SO0496at 520.682 kb on + strand, within SO0496at 520.684 kb on - strand, within SO0496at 520.687 kb on + strand, within SO0496at 520.687 kb on + strand, within SO0496at 520.690 kb on - strand, within SO0496at 520.690 kb on - strand, within SO0496at 520.690 kb on - strand, within SO0496at 520.690 kb on - strand, within SO0496at 520.690 kb on - strand, within SO0496at 520.690 kb on - strand, within SO0496at 520.690 kb on - strand, within SO0496at 520.690 kb on - strand, within SO0496at 520.690 kb on - strand, within SO0496at 520.695 kb on - strand, within SO0496at 520.701 kb on + strand, within SO0496at 520.701 kb on + strand, within SO0496at 520.709 kb on - strand, within SO0496at 520.725 kb on + strand, within SO0496at 520.732 kb on - strand, within SO0496at 520.740 kb on + strand, within SO0496at 520.740 kb on + strand, within SO0496at 520.748 kb on - strand, within SO0496at 520.748 kb on - strand, within SO0496at 520.748 kb on - strand, within SO0496at 520.748 kb on - strand, within SO0496at 520.763 kb on - strand, within SO0496at 520.806 kb on + strand, within SO0496at 520.806 kb on + strand, within SO0496at 520.806 kb on + strand, within SO0496at 520.806 kb on + strand, within SO0496at 520.811 kb on + strand, within SO0496at 520.811 kb on + strand, within SO0496at 520.814 kb on - strand, within SO0496at 520.814 kb on - strand, within SO0496at 520.816 kb on - strand, within SO0496at 520.819 kb on - strand, within SO0496at 520.819 kb on - strand, within SO0496at 520.819 kb on - strand, within SO0496at 520.819 kb on - strand, within SO0496at 520.819 kb on - strand, within SO0496at 520.819 kb on - strand, within SO0496at 520.831 kb on + strand, within SO0496at 520.831 kb on + strand, within SO0496at 520.831 kb on + strand, within SO0496at 520.831 kb on + strand, within SO0496at 520.832 kb on + strand, within SO0496at 520.832 kb on - strand, within SO0496at 520.832 kb on - strand, within SO0496at 520.832 kb on - strand, within SO0496at 520.833 kb on - strand, within SO0496at 520.839 kb on - strand, within SO0496at 520.839 kb on - strand, within SO0496at 520.839 kb on - strand, within SO0496at 520.839 kb on - strand, within SO0496at 520.839 kb on - strand, within SO0496at 520.839 kb on - strand, within SO0496at 520.839 kb on - strand, within SO0496at 520.839 kb on - strand, within SO0496at 520.839 kb on - strand, within SO0496at 520.839 kb on - strand, within SO0496at 520.901 kb on + strand, within SO0496at 520.918 kb on - strand, within SO0496at 520.919 kb on - strand, within SO0496at 520.935 kb on + strand, within SO0496at 520.935 kb on + strand, within SO0496at 520.950 kb on + strand, within SO0496at 520.950 kb on - strand, within SO0496at 520.950 kb on - strand, within SO0496at 520.955 kb on + strand, within SO0496at 520.959 kb on + strand, within SO0496at 520.959 kb on + strand, within SO0496at 520.959 kb on + strand, within SO0496at 520.966 kb on + strand, within SO0496at 520.966 kb on + strand, within SO0496at 520.967 kb on - strand, within SO0496at 520.967 kb on - strand, within SO0496at 520.967 kb on - strand, within SO0496at 520.972 kb on + strand, within SO0496at 520.974 kb on - strand, within SO0496at 520.980 kb on - strand, within SO0496at 520.981 kb on + strand, within SO0496at 520.989 kb on - strand, within SO0496at 520.991 kb on + strand, within SO0496at 521.046 kb on + strand, within SO0496at 521.060 kb on - strand, within SO0496at 521.094 kb on - strand, within SO0496at 521.116 kb on - strand, within SO0496at 521.118 kb on - strand, within SO0496at 521.118 kb on - strand, within SO0496at 521.141 kb on + strand, within SO0496at 521.149 kb on - strand, within SO0496at 521.196 kb on - strand, within SO0496at 521.233 kb on + strandat 521.287 kb on - strandat 521.294 kb on - strandat 521.294 kb on - strandat 521.410 kb on + strandat 521.418 kb on - strandat 521.450 kb on + strandat 521.466 kb on + strandat 521.511 kb on + strandat 521.587 kb on + strandat 521.672 kb on - strandat 521.899 kb on - strand, within SO0497at 521.922 kb on + strand, within SO0497at 521.983 kb on - strand, within SO0497at 521.983 kb on - strand, within SO0497at 522.098 kb on + strand, within SO0497at 522.142 kb on + strand, within SO0497at 522.145 kb on + strand, within SO0497at 522.150 kb on - strand, within SO0497at 522.163 kb on - strand, within SO0497at 522.286 kb on - strand, within SO0497at 522.286 kb on - strand, within SO0497at 522.324 kb on + strand, within SO0497at 522.330 kb on - strand, within SO0497at 522.358 kb on + strand, within SO0497at 522.401 kb on + strand, within SO0497at 522.445 kb on - strand, within SO0497at 522.461 kb on + strand, within SO0497at 522.539 kb on + strand, within SO0497at 522.539 kb on + strand, within SO0497at 522.578 kb on + strand, within SO0497at 522.578 kb on + strand, within SO0497at 522.707 kb on + strand, within SO0497at 522.707 kb on + strand, within SO0497at 522.751 kb on - strand, within SO0497at 522.756 kb on - strand, within SO0497at 522.810 kb on + strand, within SO0497at 522.818 kb on - strand, within SO0497at 522.818 kb on - strand, within SO0497at 522.818 kb on - strand, within SO0497at 522.882 kb on + strand, within SO0497at 522.937 kb on + strand, within SO0497at 522.937 kb on - strand, within SO0497at 522.987 kb on - strand, within SO0497at 523.001 kb on - strand, within SO0497at 523.007 kb on - strand, within SO0497at 523.054 kb on + strand, within SO0497at 523.104 kb on + strand, within SO0497at 523.125 kb on + strand, within SO0497at 523.134 kb on - strand, within SO0497at 523.180 kb on + strand, within SO0497at 523.180 kb on + strand, within SO0497at 523.271 kb on + strand, within SO0497at 523.300 kb on - strand, within SO0497at 523.570 kb on + strandat 523.578 kb on - strandat 523.609 kb on - strandat 523.791 kb on - strandat 523.831 kb on + strandat 523.834 kb on - strandat 523.864 kb on + strandat 523.864 kb on - strandat 523.871 kb on + strandat 523.931 kb on + strandat 523.936 kb on + strandat 523.945 kb on + strandat 523.948 kb on - strandat 523.954 kb on + strandat 524.039 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (C)
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520,636 + SO0496 0.29 +2.7
520,636 + SO0496 0.29 -0.1
520,644 - SO0496 0.30 +0.8
520,644 - SO0496 0.30 +0.5
520,668 - SO0496 0.32 +0.1
520,677 + SO0496 0.33 +0.6
520,682 + SO0496 0.34 +0.7
520,684 - SO0496 0.34 +0.0
520,687 + SO0496 0.34 +0.4
520,687 + SO0496 0.34 -0.5
520,690 - SO0496 0.35 -0.3
520,690 - SO0496 0.35 -0.3
520,690 - SO0496 0.35 -0.1
520,690 - SO0496 0.35 +0.7
520,690 - SO0496 0.35 -0.1
520,690 - SO0496 0.35 -0.5
520,690 - SO0496 0.35 +0.3
520,690 - SO0496 0.35 +0.5
520,690 - SO0496 0.35 -1.8
520,695 - SO0496 0.35 -0.6
520,701 + SO0496 0.36 +0.3
520,701 + SO0496 0.36 -0.5
520,709 - SO0496 0.37 +0.2
520,725 + SO0496 0.38 +0.5
520,732 - SO0496 0.39 +0.0
520,740 + SO0496 0.40 -0.9
520,740 + SO0496 0.40 +0.0
520,748 - SO0496 0.41 -0.3
520,748 - SO0496 0.41 -0.3
520,748 - SO0496 0.41 +1.5
520,748 - SO0496 0.41 -1.2
520,763 - SO0496 0.42 +0.3
520,806 + SO0496 0.47 +1.1
520,806 + SO0496 0.47 +1.9
520,806 + SO0496 0.47 +0.3
520,806 + SO0496 0.47 +0.4
520,811 + SO0496 0.48 +0.2
520,811 + SO0496 0.48 +0.1
520,814 - SO0496 0.48 +0.1
520,814 - SO0496 0.48 -0.2
520,816 - SO0496 0.48 +1.1
520,819 - SO0496 0.48 +0.4
520,819 - SO0496 0.48 +0.4
520,819 - SO0496 0.48 +0.1
520,819 - SO0496 0.48 +0.6
520,819 - SO0496 0.48 +0.2
520,819 - SO0496 0.48 -0.5
520,831 + SO0496 0.50 -0.0
520,831 + SO0496 0.50 +0.5
520,831 + SO0496 0.50 +0.2
520,831 + SO0496 0.50 -0.1
520,832 + SO0496 0.50 +0.8
520,832 - SO0496 0.50 +1.1
520,832 - SO0496 0.50 -0.7
520,832 - SO0496 0.50 +0.4
520,833 - SO0496 0.50 -0.8
520,839 - SO0496 0.51 -1.7
520,839 - SO0496 0.51 -0.3
520,839 - SO0496 0.51 +0.6
520,839 - SO0496 0.51 +1.7
520,839 - SO0496 0.51 +0.0
520,839 - SO0496 0.51 -0.9
520,839 - SO0496 0.51 +0.6
520,839 - SO0496 0.51 +0.1
520,839 - SO0496 0.51 -0.1
520,839 - SO0496 0.51 -0.2
520,901 + SO0496 0.57 +0.9
520,918 - SO0496 0.59 +0.3
520,919 - SO0496 0.59 +0.7
520,935 + SO0496 0.61 +0.4
520,935 + SO0496 0.61 -0.1
520,950 + SO0496 0.63 +0.4
520,950 - SO0496 0.63 -0.5
520,950 - SO0496 0.63 +1.9
520,955 + SO0496 0.63 -0.5
520,959 + SO0496 0.64 +0.1
520,959 + SO0496 0.64 +0.9
520,959 + SO0496 0.64 +0.4
520,966 + SO0496 0.64 +0.5
520,966 + SO0496 0.64 +0.3
520,967 - SO0496 0.65 +0.1
520,967 - SO0496 0.65 -0.4
520,967 - SO0496 0.65 +0.7
520,972 + SO0496 0.65 -1.1
520,974 - SO0496 0.65 -0.5
520,980 - SO0496 0.66 -0.2
520,981 + SO0496 0.66 +0.2
520,989 - SO0496 0.67 +0.9
520,991 + SO0496 0.67 -0.1
521,046 + SO0496 0.73 -0.5
521,060 - SO0496 0.75 -0.6
521,094 - SO0496 0.78 -0.8
521,116 - SO0496 0.81 -2.1
521,118 - SO0496 0.81 +1.5
521,118 - SO0496 0.81 +1.7
521,141 + SO0496 0.83 -1.2
521,149 - SO0496 0.84 +0.0
521,196 - SO0496 0.89 +0.1
521,233 + -0.2
521,287 - -0.7
521,294 - +0.4
521,294 - -0.3
521,410 + +0.0
521,418 - -0.1
521,450 + +0.7
521,466 + -0.5
521,511 + +0.2
521,587 + +0.3
521,672 - +0.4
521,899 - SO0497 0.14 +0.5
521,922 + SO0497 0.15 -0.7
521,983 - SO0497 0.18 -0.5
521,983 - SO0497 0.18 -1.1
522,098 + SO0497 0.24 -0.3
522,142 + SO0497 0.26 -1.4
522,145 + SO0497 0.26 +0.1
522,150 - SO0497 0.27 +0.3
522,163 - SO0497 0.27 +0.7
522,286 - SO0497 0.34 +0.7
522,286 - SO0497 0.34 +1.6
522,324 + SO0497 0.36 +0.5
522,330 - SO0497 0.36 -0.3
522,358 + SO0497 0.37 -1.1
522,401 + SO0497 0.39 +0.6
522,445 - SO0497 0.42 +0.1
522,461 + SO0497 0.43 -0.2
522,539 + SO0497 0.46 +0.3
522,539 + SO0497 0.46 +0.6
522,578 + SO0497 0.48 +1.0
522,578 + SO0497 0.48 +0.5
522,707 + SO0497 0.55 -0.5
522,707 + SO0497 0.55 +1.1
522,751 - SO0497 0.57 +0.3
522,756 - SO0497 0.58 -1.1
522,810 + SO0497 0.60 -0.1
522,818 - SO0497 0.61 -0.2
522,818 - SO0497 0.61 +0.2
522,818 - SO0497 0.61 -0.2
522,882 + SO0497 0.64 -0.9
522,937 + SO0497 0.67 +0.1
522,937 - SO0497 0.67 +0.0
522,987 - SO0497 0.69 +0.7
523,001 - SO0497 0.70 -0.6
523,007 - SO0497 0.70 -0.1
523,054 + SO0497 0.73 +0.1
523,104 + SO0497 0.75 -0.1
523,125 + SO0497 0.76 -0.7
523,134 - SO0497 0.77 +1.9
523,180 + SO0497 0.79 -0.3
523,180 + SO0497 0.79 -0.1
523,271 + SO0497 0.84 -0.2
523,300 - SO0497 0.85 -1.1
523,570 + -0.5
523,578 - +0.2
523,609 - -0.4
523,791 - +0.6
523,831 + -0.0
523,834 - +1.1
523,864 + +0.8
523,864 - -0.4
523,871 + -0.1
523,931 + +0.6
523,936 + -0.2
523,945 + -1.4
523,948 - -0.7
523,954 + +0.5
524,039 + +0.5

Or see this region's nucleotide sequence