Experiment: m.b. Furfuryl Alcohol 0.064 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00080 and PGA1_c00090 are separated by 153 nucleotides PGA1_c00090 and PGA1_c00100 are separated by 11 nucleotides
PGA1_c00080: PGA1_c00080 - hypothetical protein, at 8,984 to 9,811
_c00080
PGA1_c00090: PGA1_c00090 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 9,965 to 11,044
_c00090
PGA1_c00100: PGA1_c00100 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 11,056 to 12,081
_c00100
Position (kb)
9
10
11
12 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 8.971 kb on - strand at 9.012 kb on + strand at 9.015 kb on + strand at 9.082 kb on + strand, within PGA1_c00080 at 9.087 kb on + strand, within PGA1_c00080 at 9.095 kb on - strand, within PGA1_c00080 at 9.095 kb on - strand, within PGA1_c00080 at 9.138 kb on - strand, within PGA1_c00080 at 9.148 kb on + strand, within PGA1_c00080 at 9.163 kb on + strand, within PGA1_c00080 at 9.166 kb on - strand, within PGA1_c00080 at 9.171 kb on - strand, within PGA1_c00080 at 9.259 kb on - strand, within PGA1_c00080 at 9.292 kb on + strand, within PGA1_c00080 at 9.311 kb on + strand, within PGA1_c00080 at 9.339 kb on - strand, within PGA1_c00080 at 9.349 kb on - strand, within PGA1_c00080 at 9.354 kb on + strand, within PGA1_c00080 at 9.362 kb on - strand, within PGA1_c00080 at 9.506 kb on - strand, within PGA1_c00080 at 9.636 kb on - strand, within PGA1_c00080 at 9.651 kb on - strand, within PGA1_c00080 at 9.694 kb on - strand, within PGA1_c00080 at 9.713 kb on + strand, within PGA1_c00080 at 9.751 kb on + strand at 9.817 kb on + strand at 9.818 kb on + strand at 9.825 kb on - strand at 9.843 kb on + strand at 9.849 kb on - strand at 9.916 kb on + strand at 9.924 kb on + strand at 9.999 kb on - strand at 10.028 kb on + strand at 10.047 kb on + strand at 10.047 kb on + strand at 10.055 kb on - strand at 10.055 kb on - strand at 10.055 kb on - strand at 10.079 kb on - strand, within PGA1_c00090 at 10.114 kb on + strand, within PGA1_c00090 at 10.127 kb on - strand, within PGA1_c00090 at 10.179 kb on + strand, within PGA1_c00090 at 10.184 kb on + strand, within PGA1_c00090 at 10.187 kb on - strand, within PGA1_c00090 at 10.189 kb on + strand, within PGA1_c00090 at 10.281 kb on - strand, within PGA1_c00090 at 10.293 kb on - strand, within PGA1_c00090 at 10.293 kb on - strand, within PGA1_c00090 at 10.336 kb on - strand, within PGA1_c00090 at 10.343 kb on + strand, within PGA1_c00090 at 10.351 kb on - strand, within PGA1_c00090 at 10.351 kb on - strand, within PGA1_c00090 at 10.359 kb on - strand, within PGA1_c00090 at 10.421 kb on + strand, within PGA1_c00090 at 10.433 kb on + strand, within PGA1_c00090 at 10.434 kb on - strand, within PGA1_c00090 at 10.443 kb on + strand, within PGA1_c00090 at 10.445 kb on + strand, within PGA1_c00090 at 10.614 kb on + strand, within PGA1_c00090 at 10.622 kb on + strand, within PGA1_c00090 at 10.622 kb on - strand, within PGA1_c00090 at 10.622 kb on - strand, within PGA1_c00090 at 10.703 kb on + strand, within PGA1_c00090 at 10.703 kb on + strand, within PGA1_c00090 at 10.704 kb on + strand, within PGA1_c00090 at 10.719 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.748 kb on - strand, within PGA1_c00090 at 10.798 kb on - strand, within PGA1_c00090 at 10.863 kb on + strand, within PGA1_c00090 at 10.864 kb on + strand, within PGA1_c00090 at 10.864 kb on + strand, within PGA1_c00090 at 10.879 kb on - strand, within PGA1_c00090 at 10.923 kb on - strand, within PGA1_c00090 at 10.954 kb on + strand at 10.959 kb on + strand at 10.967 kb on - strand at 10.972 kb on - strand at 11.007 kb on - strand at 11.021 kb on + strand at 11.026 kb on + strand at 11.029 kb on - strand at 11.029 kb on - strand at 11.105 kb on + strand at 11.170 kb on + strand, within PGA1_c00100 at 11.242 kb on + strand, within PGA1_c00100 at 11.250 kb on - strand, within PGA1_c00100 at 11.258 kb on + strand, within PGA1_c00100 at 11.291 kb on + strand, within PGA1_c00100 at 11.296 kb on + strand, within PGA1_c00100 at 11.304 kb on - strand, within PGA1_c00100 at 11.306 kb on - strand, within PGA1_c00100 at 11.328 kb on + strand, within PGA1_c00100 at 11.391 kb on + strand, within PGA1_c00100 at 11.399 kb on - strand, within PGA1_c00100 at 11.399 kb on - strand, within PGA1_c00100 at 11.402 kb on + strand, within PGA1_c00100 at 11.409 kb on - strand, within PGA1_c00100 at 11.409 kb on - strand, within PGA1_c00100 at 11.415 kb on - strand, within PGA1_c00100 at 11.424 kb on + strand, within PGA1_c00100 at 11.424 kb on + strand, within PGA1_c00100 at 11.424 kb on + strand, within PGA1_c00100 at 11.432 kb on - strand, within PGA1_c00100 at 11.432 kb on - strand, within PGA1_c00100 at 11.455 kb on + strand, within PGA1_c00100 at 11.455 kb on + strand, within PGA1_c00100 at 11.463 kb on - strand, within PGA1_c00100 at 11.463 kb on - strand, within PGA1_c00100 at 11.463 kb on - strand, within PGA1_c00100 at 11.474 kb on + strand, within PGA1_c00100 at 11.474 kb on + strand, within PGA1_c00100 at 11.474 kb on + strand, within PGA1_c00100 at 11.482 kb on - strand, within PGA1_c00100 at 11.544 kb on - strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.586 kb on - strand, within PGA1_c00100 at 11.586 kb on - strand, within PGA1_c00100 at 11.586 kb on - strand, within PGA1_c00100 at 11.586 kb on - strand, within PGA1_c00100 at 11.650 kb on + strand, within PGA1_c00100 at 11.678 kb on + strand, within PGA1_c00100 at 11.686 kb on - strand, within PGA1_c00100 at 11.686 kb on - strand, within PGA1_c00100 at 11.688 kb on + strand, within PGA1_c00100 at 11.688 kb on + strand, within PGA1_c00100 at 11.695 kb on + strand, within PGA1_c00100 at 11.695 kb on + strand, within PGA1_c00100 at 11.703 kb on - strand, within PGA1_c00100 at 11.705 kb on + strand, within PGA1_c00100 at 11.707 kb on + strand, within PGA1_c00100 at 11.715 kb on + strand, within PGA1_c00100 at 11.715 kb on + strand, within PGA1_c00100 at 11.715 kb on + strand, within PGA1_c00100 at 11.715 kb on + strand, within PGA1_c00100 at 11.715 kb on - strand, within PGA1_c00100 at 11.731 kb on - strand, within PGA1_c00100 at 11.743 kb on + strand, within PGA1_c00100 at 11.761 kb on - strand, within PGA1_c00100 at 11.761 kb on - strand, within PGA1_c00100 at 11.774 kb on + strand, within PGA1_c00100 at 11.837 kb on - strand, within PGA1_c00100 at 11.850 kb on - strand, within PGA1_c00100 at 11.892 kb on - strand, within PGA1_c00100 at 11.906 kb on - strand, within PGA1_c00100 at 11.914 kb on - strand, within PGA1_c00100 at 11.932 kb on + strand, within PGA1_c00100 at 11.988 kb on + strand at 11.998 kb on + strand at 11.998 kb on + strand at 11.998 kb on + strand at 11.998 kb on + strand at 12.001 kb on - strand at 12.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol% remove 8,971 - -0.8 9,012 + -1.6 9,015 + -0.8 9,082 + PGA1_c00080 0.12 -1.6 9,087 + PGA1_c00080 0.12 -0.3 9,095 - PGA1_c00080 0.13 +0.8 9,095 - PGA1_c00080 0.13 +1.3 9,138 - PGA1_c00080 0.19 +0.0 9,148 + PGA1_c00080 0.20 -0.4 9,163 + PGA1_c00080 0.22 +1.3 9,166 - PGA1_c00080 0.22 +0.3 9,171 - PGA1_c00080 0.23 -0.7 9,259 - PGA1_c00080 0.33 -0.4 9,292 + PGA1_c00080 0.37 -0.5 9,311 + PGA1_c00080 0.39 +1.0 9,339 - PGA1_c00080 0.43 -0.2 9,349 - PGA1_c00080 0.44 -1.2 9,354 + PGA1_c00080 0.45 +0.4 9,362 - PGA1_c00080 0.46 +0.3 9,506 - PGA1_c00080 0.63 +0.8 9,636 - PGA1_c00080 0.79 -0.5 9,651 - PGA1_c00080 0.81 -2.7 9,694 - PGA1_c00080 0.86 -1.1 9,713 + PGA1_c00080 0.88 +1.0 9,751 + -0.9 9,817 + -0.6 9,818 + -1.2 9,825 - -0.8 9,843 + -0.1 9,849 - -1.8 9,916 + +0.2 9,924 + +0.6 9,999 - -0.5 10,028 + -1.5 10,047 + +1.6 10,047 + -1.2 10,055 - +0.4 10,055 - -0.3 10,055 - -0.8 10,079 - PGA1_c00090 0.11 -1.2 10,114 + PGA1_c00090 0.14 +1.4 10,127 - PGA1_c00090 0.15 +0.1 10,179 + PGA1_c00090 0.20 +0.0 10,184 + PGA1_c00090 0.20 -0.1 10,187 - PGA1_c00090 0.21 -0.3 10,189 + PGA1_c00090 0.21 +0.5 10,281 - PGA1_c00090 0.29 +0.1 10,293 - PGA1_c00090 0.30 +0.3 10,293 - PGA1_c00090 0.30 -1.0 10,336 - PGA1_c00090 0.34 +0.9 10,343 + PGA1_c00090 0.35 +0.7 10,351 - PGA1_c00090 0.36 -0.7 10,351 - PGA1_c00090 0.36 -1.1 10,359 - PGA1_c00090 0.36 +0.6 10,421 + PGA1_c00090 0.42 +0.5 10,433 + PGA1_c00090 0.43 +1.8 10,434 - PGA1_c00090 0.43 -1.2 10,443 + PGA1_c00090 0.44 -0.8 10,445 + PGA1_c00090 0.44 -1.4 10,614 + PGA1_c00090 0.60 +0.7 10,622 + PGA1_c00090 0.61 -0.3 10,622 - PGA1_c00090 0.61 -2.5 10,622 - PGA1_c00090 0.61 -1.4 10,703 + PGA1_c00090 0.68 -1.6 10,703 + PGA1_c00090 0.68 -0.5 10,704 + PGA1_c00090 0.68 +0.2 10,719 + PGA1_c00090 0.70 +1.6 10,740 + PGA1_c00090 0.72 +1.2 10,740 + PGA1_c00090 0.72 +0.2 10,740 + PGA1_c00090 0.72 -0.4 10,740 + PGA1_c00090 0.72 +2.7 10,748 - PGA1_c00090 0.72 +0.2 10,798 - PGA1_c00090 0.77 +1.8 10,863 + PGA1_c00090 0.83 +0.4 10,864 + PGA1_c00090 0.83 +0.7 10,864 + PGA1_c00090 0.83 +0.9 10,879 - PGA1_c00090 0.85 +0.3 10,923 - PGA1_c00090 0.89 -0.4 10,954 + +1.3 10,959 + -0.2 10,967 - +0.3 10,972 - -0.6 11,007 - +0.0 11,021 + -0.0 11,026 + -0.6 11,029 - -0.2 11,029 - +0.6 11,105 + -0.2 11,170 + PGA1_c00100 0.11 +0.0 11,242 + PGA1_c00100 0.18 +0.6 11,250 - PGA1_c00100 0.19 +0.2 11,258 + PGA1_c00100 0.20 +0.4 11,291 + PGA1_c00100 0.23 -0.1 11,296 + PGA1_c00100 0.23 -0.5 11,304 - PGA1_c00100 0.24 +1.3 11,306 - PGA1_c00100 0.24 -0.0 11,328 + PGA1_c00100 0.27 -1.1 11,391 + PGA1_c00100 0.33 -0.7 11,399 - PGA1_c00100 0.33 +0.0 11,399 - PGA1_c00100 0.33 +0.9 11,402 + PGA1_c00100 0.34 +0.9 11,409 - PGA1_c00100 0.34 -0.2 11,409 - PGA1_c00100 0.34 -1.9 11,415 - PGA1_c00100 0.35 -0.4 11,424 + PGA1_c00100 0.36 -1.0 11,424 + PGA1_c00100 0.36 -2.7 11,424 + PGA1_c00100 0.36 -0.8 11,432 - PGA1_c00100 0.37 -0.6 11,432 - PGA1_c00100 0.37 -1.6 11,455 + PGA1_c00100 0.39 +0.1 11,455 + PGA1_c00100 0.39 -1.5 11,463 - PGA1_c00100 0.40 -1.8 11,463 - PGA1_c00100 0.40 -1.1 11,463 - PGA1_c00100 0.40 -0.1 11,474 + PGA1_c00100 0.41 -0.4 11,474 + PGA1_c00100 0.41 -1.0 11,474 + PGA1_c00100 0.41 -0.1 11,482 - PGA1_c00100 0.42 +0.8 11,544 - PGA1_c00100 0.48 -0.6 11,578 + PGA1_c00100 0.51 +0.2 11,578 + PGA1_c00100 0.51 +0.0 11,578 + PGA1_c00100 0.51 -0.1 11,578 + PGA1_c00100 0.51 -1.4 11,578 + PGA1_c00100 0.51 -1.2 11,578 + PGA1_c00100 0.51 +0.5 11,586 - PGA1_c00100 0.52 +0.9 11,586 - PGA1_c00100 0.52 +0.1 11,586 - PGA1_c00100 0.52 -0.5 11,586 - PGA1_c00100 0.52 -0.2 11,650 + PGA1_c00100 0.58 +0.3 11,678 + PGA1_c00100 0.61 -0.2 11,686 - PGA1_c00100 0.61 -0.7 11,686 - PGA1_c00100 0.61 -0.8 11,688 + PGA1_c00100 0.62 +0.1 11,688 + PGA1_c00100 0.62 -1.8 11,695 + PGA1_c00100 0.62 +0.8 11,695 + PGA1_c00100 0.62 +0.5 11,703 - PGA1_c00100 0.63 -1.1 11,705 + PGA1_c00100 0.63 -0.8 11,707 + PGA1_c00100 0.63 +0.2 11,715 + PGA1_c00100 0.64 -0.0 11,715 + PGA1_c00100 0.64 -0.3 11,715 + PGA1_c00100 0.64 +0.7 11,715 + PGA1_c00100 0.64 -2.5 11,715 - PGA1_c00100 0.64 -2.8 11,731 - PGA1_c00100 0.66 +0.4 11,743 + PGA1_c00100 0.67 +0.2 11,761 - PGA1_c00100 0.69 -1.2 11,761 - PGA1_c00100 0.69 -0.2 11,774 + PGA1_c00100 0.70 -0.3 11,837 - PGA1_c00100 0.76 -0.6 11,850 - PGA1_c00100 0.77 +0.4 11,892 - PGA1_c00100 0.81 -0.3 11,906 - PGA1_c00100 0.83 -1.0 11,914 - PGA1_c00100 0.84 +0.0 11,932 + PGA1_c00100 0.85 +0.5 11,988 + +0.5 11,998 + +0.4 11,998 + +1.2 11,998 + -0.7 11,998 + +1.2 12,001 - +0.6 12,009 + -0.3
Or see this region's nucleotide sequence