Experiment: m.b. Furfuryl Alcohol 0.064 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c28310 and PGA1_c28320 are separated by 51 nucleotides PGA1_c28320 and PGA1_c28330 overlap by 8 nucleotides PGA1_c28330 and PGA1_c28340 are separated by 149 nucleotides
PGA1_c28310: PGA1_c28310 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 2,961,032 to 2,962,051
_c28310
PGA1_c28320: PGA1_c28320 - ABC transporter, ATP-binding protein, at 2,962,103 to 2,962,870
_c28320
PGA1_c28330: PGA1_c28330 - ABC transporter permease protein, at 2,962,863 to 2,963,714
_c28330
PGA1_c28340: PGA1_c28340 - isocitrate dehydrogenase [NADP], at 2,963,864 to 2,966,236
_c28340
Position (kb)
2962
2963
2964 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2961.934 kb on + strand, within PGA1_c28310 at 2961.940 kb on - strand, within PGA1_c28310 at 2961.942 kb on + strand, within PGA1_c28310 at 2961.942 kb on - strand, within PGA1_c28310 at 2962.060 kb on - strand at 2962.127 kb on + strand at 2962.133 kb on + strand at 2962.151 kb on + strand at 2962.268 kb on - strand, within PGA1_c28320 at 2962.308 kb on + strand, within PGA1_c28320 at 2962.308 kb on + strand, within PGA1_c28320 at 2962.316 kb on + strand, within PGA1_c28320 at 2962.316 kb on - strand, within PGA1_c28320 at 2962.372 kb on - strand, within PGA1_c28320 at 2962.372 kb on - strand, within PGA1_c28320 at 2962.372 kb on - strand, within PGA1_c28320 at 2962.374 kb on + strand, within PGA1_c28320 at 2962.388 kb on - strand, within PGA1_c28320 at 2962.388 kb on - strand, within PGA1_c28320 at 2962.437 kb on + strand, within PGA1_c28320 at 2962.439 kb on + strand, within PGA1_c28320 at 2962.480 kb on + strand, within PGA1_c28320 at 2962.513 kb on + strand, within PGA1_c28320 at 2962.536 kb on - strand, within PGA1_c28320 at 2962.655 kb on + strand, within PGA1_c28320 at 2962.662 kb on + strand, within PGA1_c28320 at 2962.750 kb on + strand, within PGA1_c28320 at 2962.753 kb on - strand, within PGA1_c28320 at 2962.885 kb on + strand at 2962.909 kb on - strand at 2962.944 kb on - strand at 2962.949 kb on - strand, within PGA1_c28330 at 2962.960 kb on + strand, within PGA1_c28330 at 2962.968 kb on - strand, within PGA1_c28330 at 2963.064 kb on - strand, within PGA1_c28330 at 2963.087 kb on + strand, within PGA1_c28330 at 2963.092 kb on + strand, within PGA1_c28330 at 2963.092 kb on + strand, within PGA1_c28330 at 2963.100 kb on - strand, within PGA1_c28330 at 2963.100 kb on - strand, within PGA1_c28330 at 2963.110 kb on - strand, within PGA1_c28330 at 2963.120 kb on + strand, within PGA1_c28330 at 2963.137 kb on + strand, within PGA1_c28330 at 2963.224 kb on - strand, within PGA1_c28330 at 2963.244 kb on - strand, within PGA1_c28330 at 2963.269 kb on - strand, within PGA1_c28330 at 2963.288 kb on + strand, within PGA1_c28330 at 2963.353 kb on + strand, within PGA1_c28330 at 2963.359 kb on + strand, within PGA1_c28330 at 2963.361 kb on - strand, within PGA1_c28330 at 2963.361 kb on - strand, within PGA1_c28330 at 2963.367 kb on - strand, within PGA1_c28330 at 2963.407 kb on + strand, within PGA1_c28330 at 2963.421 kb on + strand, within PGA1_c28330 at 2963.498 kb on - strand, within PGA1_c28330 at 2963.570 kb on - strand, within PGA1_c28330 at 2963.646 kb on + strand at 2963.689 kb on - strand at 2963.792 kb on - strand at 2963.801 kb on + strand at 2963.804 kb on - strand at 2963.808 kb on + strand at 2963.809 kb on - strand at 2963.809 kb on - strand at 2963.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol% remove 2,961,934 + PGA1_c28310 0.88 -1.0 2,961,940 - PGA1_c28310 0.89 +3.8 2,961,942 + PGA1_c28310 0.89 -0.9 2,961,942 - PGA1_c28310 0.89 +0.7 2,962,060 - -0.2 2,962,127 + +0.9 2,962,133 + -1.7 2,962,151 + +0.7 2,962,268 - PGA1_c28320 0.21 -1.2 2,962,308 + PGA1_c28320 0.27 +1.0 2,962,308 + PGA1_c28320 0.27 +0.4 2,962,316 + PGA1_c28320 0.28 -0.2 2,962,316 - PGA1_c28320 0.28 +0.2 2,962,372 - PGA1_c28320 0.35 +1.0 2,962,372 - PGA1_c28320 0.35 +0.4 2,962,372 - PGA1_c28320 0.35 -0.6 2,962,374 + PGA1_c28320 0.35 +1.0 2,962,388 - PGA1_c28320 0.37 -0.4 2,962,388 - PGA1_c28320 0.37 -0.6 2,962,437 + PGA1_c28320 0.43 -1.6 2,962,439 + PGA1_c28320 0.44 +0.4 2,962,480 + PGA1_c28320 0.49 +0.4 2,962,513 + PGA1_c28320 0.53 -1.1 2,962,536 - PGA1_c28320 0.56 +0.5 2,962,655 + PGA1_c28320 0.72 -0.9 2,962,662 + PGA1_c28320 0.73 -1.1 2,962,750 + PGA1_c28320 0.84 +0.4 2,962,753 - PGA1_c28320 0.85 +0.6 2,962,885 + +0.8 2,962,909 - +2.6 2,962,944 - +0.7 2,962,949 - PGA1_c28330 0.10 +0.5 2,962,960 + PGA1_c28330 0.11 -2.1 2,962,968 - PGA1_c28330 0.12 +0.0 2,963,064 - PGA1_c28330 0.24 -0.7 2,963,087 + PGA1_c28330 0.26 -0.3 2,963,092 + PGA1_c28330 0.27 +1.8 2,963,092 + PGA1_c28330 0.27 +0.3 2,963,100 - PGA1_c28330 0.28 +0.2 2,963,100 - PGA1_c28330 0.28 -0.8 2,963,110 - PGA1_c28330 0.29 -1.0 2,963,120 + PGA1_c28330 0.30 -0.9 2,963,137 + PGA1_c28330 0.32 -0.9 2,963,224 - PGA1_c28330 0.42 -2.0 2,963,244 - PGA1_c28330 0.45 -1.6 2,963,269 - PGA1_c28330 0.48 -1.0 2,963,288 + PGA1_c28330 0.50 -2.1 2,963,353 + PGA1_c28330 0.58 -0.3 2,963,359 + PGA1_c28330 0.58 +1.3 2,963,361 - PGA1_c28330 0.58 -0.3 2,963,361 - PGA1_c28330 0.58 +0.7 2,963,367 - PGA1_c28330 0.59 -1.1 2,963,407 + PGA1_c28330 0.64 +0.0 2,963,421 + PGA1_c28330 0.65 +0.3 2,963,498 - PGA1_c28330 0.75 -0.2 2,963,570 - PGA1_c28330 0.83 -0.4 2,963,646 + +0.7 2,963,689 - -1.3 2,963,792 - -1.0 2,963,801 + +0.4 2,963,804 - +0.7 2,963,808 + +0.4 2,963,809 - +0.8 2,963,809 - -0.3 2,963,809 - -1.3
Or see this region's nucleotide sequence