Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28330

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c28310 and PGA1_c28320 are separated by 51 nucleotidesPGA1_c28320 and PGA1_c28330 overlap by 8 nucleotidesPGA1_c28330 and PGA1_c28340 are separated by 149 nucleotides PGA1_c28310: PGA1_c28310 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 2,961,032 to 2,962,051 _c28310 PGA1_c28320: PGA1_c28320 - ABC transporter, ATP-binding protein, at 2,962,103 to 2,962,870 _c28320 PGA1_c28330: PGA1_c28330 - ABC transporter permease protein, at 2,962,863 to 2,963,714 _c28330 PGA1_c28340: PGA1_c28340 - isocitrate dehydrogenase [NADP], at 2,963,864 to 2,966,236 _c28340 Position (kb) 2962 2963 2964Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2961.934 kb on + strand, within PGA1_c28310at 2961.940 kb on - strand, within PGA1_c28310at 2961.942 kb on + strand, within PGA1_c28310at 2961.942 kb on - strand, within PGA1_c28310at 2962.060 kb on - strandat 2962.127 kb on + strandat 2962.133 kb on + strandat 2962.151 kb on + strandat 2962.268 kb on - strand, within PGA1_c28320at 2962.308 kb on + strand, within PGA1_c28320at 2962.308 kb on + strand, within PGA1_c28320at 2962.316 kb on + strand, within PGA1_c28320at 2962.316 kb on - strand, within PGA1_c28320at 2962.372 kb on - strand, within PGA1_c28320at 2962.372 kb on - strand, within PGA1_c28320at 2962.372 kb on - strand, within PGA1_c28320at 2962.374 kb on + strand, within PGA1_c28320at 2962.388 kb on - strand, within PGA1_c28320at 2962.388 kb on - strand, within PGA1_c28320at 2962.437 kb on + strand, within PGA1_c28320at 2962.439 kb on + strand, within PGA1_c28320at 2962.480 kb on + strand, within PGA1_c28320at 2962.513 kb on + strand, within PGA1_c28320at 2962.536 kb on - strand, within PGA1_c28320at 2962.655 kb on + strand, within PGA1_c28320at 2962.662 kb on + strand, within PGA1_c28320at 2962.750 kb on + strand, within PGA1_c28320at 2962.753 kb on - strand, within PGA1_c28320at 2962.885 kb on + strandat 2962.909 kb on - strandat 2962.944 kb on - strandat 2962.949 kb on - strand, within PGA1_c28330at 2962.960 kb on + strand, within PGA1_c28330at 2962.968 kb on - strand, within PGA1_c28330at 2963.064 kb on - strand, within PGA1_c28330at 2963.087 kb on + strand, within PGA1_c28330at 2963.092 kb on + strand, within PGA1_c28330at 2963.092 kb on + strand, within PGA1_c28330at 2963.100 kb on - strand, within PGA1_c28330at 2963.100 kb on - strand, within PGA1_c28330at 2963.110 kb on - strand, within PGA1_c28330at 2963.120 kb on + strand, within PGA1_c28330at 2963.137 kb on + strand, within PGA1_c28330at 2963.224 kb on - strand, within PGA1_c28330at 2963.244 kb on - strand, within PGA1_c28330at 2963.269 kb on - strand, within PGA1_c28330at 2963.288 kb on + strand, within PGA1_c28330at 2963.353 kb on + strand, within PGA1_c28330at 2963.359 kb on + strand, within PGA1_c28330at 2963.361 kb on - strand, within PGA1_c28330at 2963.361 kb on - strand, within PGA1_c28330at 2963.367 kb on - strand, within PGA1_c28330at 2963.407 kb on + strand, within PGA1_c28330at 2963.421 kb on + strand, within PGA1_c28330at 2963.498 kb on - strand, within PGA1_c28330at 2963.570 kb on - strand, within PGA1_c28330at 2963.646 kb on + strandat 2963.689 kb on - strandat 2963.792 kb on - strandat 2963.801 kb on + strandat 2963.804 kb on - strandat 2963.808 kb on + strandat 2963.809 kb on - strandat 2963.809 kb on - strandat 2963.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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2,961,934 + PGA1_c28310 0.88 -1.0
2,961,940 - PGA1_c28310 0.89 +3.8
2,961,942 + PGA1_c28310 0.89 -0.9
2,961,942 - PGA1_c28310 0.89 +0.7
2,962,060 - -0.2
2,962,127 + +0.9
2,962,133 + -1.7
2,962,151 + +0.7
2,962,268 - PGA1_c28320 0.21 -1.2
2,962,308 + PGA1_c28320 0.27 +1.0
2,962,308 + PGA1_c28320 0.27 +0.4
2,962,316 + PGA1_c28320 0.28 -0.2
2,962,316 - PGA1_c28320 0.28 +0.2
2,962,372 - PGA1_c28320 0.35 +1.0
2,962,372 - PGA1_c28320 0.35 +0.4
2,962,372 - PGA1_c28320 0.35 -0.6
2,962,374 + PGA1_c28320 0.35 +1.0
2,962,388 - PGA1_c28320 0.37 -0.4
2,962,388 - PGA1_c28320 0.37 -0.6
2,962,437 + PGA1_c28320 0.43 -1.6
2,962,439 + PGA1_c28320 0.44 +0.4
2,962,480 + PGA1_c28320 0.49 +0.4
2,962,513 + PGA1_c28320 0.53 -1.1
2,962,536 - PGA1_c28320 0.56 +0.5
2,962,655 + PGA1_c28320 0.72 -0.9
2,962,662 + PGA1_c28320 0.73 -1.1
2,962,750 + PGA1_c28320 0.84 +0.4
2,962,753 - PGA1_c28320 0.85 +0.6
2,962,885 + +0.8
2,962,909 - +2.6
2,962,944 - +0.7
2,962,949 - PGA1_c28330 0.10 +0.5
2,962,960 + PGA1_c28330 0.11 -2.1
2,962,968 - PGA1_c28330 0.12 +0.0
2,963,064 - PGA1_c28330 0.24 -0.7
2,963,087 + PGA1_c28330 0.26 -0.3
2,963,092 + PGA1_c28330 0.27 +1.8
2,963,092 + PGA1_c28330 0.27 +0.3
2,963,100 - PGA1_c28330 0.28 +0.2
2,963,100 - PGA1_c28330 0.28 -0.8
2,963,110 - PGA1_c28330 0.29 -1.0
2,963,120 + PGA1_c28330 0.30 -0.9
2,963,137 + PGA1_c28330 0.32 -0.9
2,963,224 - PGA1_c28330 0.42 -2.0
2,963,244 - PGA1_c28330 0.45 -1.6
2,963,269 - PGA1_c28330 0.48 -1.0
2,963,288 + PGA1_c28330 0.50 -2.1
2,963,353 + PGA1_c28330 0.58 -0.3
2,963,359 + PGA1_c28330 0.58 +1.3
2,963,361 - PGA1_c28330 0.58 -0.3
2,963,361 - PGA1_c28330 0.58 +0.7
2,963,367 - PGA1_c28330 0.59 -1.1
2,963,407 + PGA1_c28330 0.64 +0.0
2,963,421 + PGA1_c28330 0.65 +0.3
2,963,498 - PGA1_c28330 0.75 -0.2
2,963,570 - PGA1_c28330 0.83 -0.4
2,963,646 + +0.7
2,963,689 - -1.3
2,963,792 - -1.0
2,963,801 + +0.4
2,963,804 - +0.7
2,963,808 + +0.4
2,963,809 - +0.8
2,963,809 - -0.3
2,963,809 - -1.3

Or see this region's nucleotide sequence