Experiment: m.b. Ceftazidime 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2599 and HP15_2600 are separated by 14 nucleotides HP15_2600 and HP15_2601 are separated by 19 nucleotides HP15_2601 and HP15_2602 overlap by 1 nucleotides
HP15_2599: HP15_2599 - isopropylmalate isomerase large subunit, at 2,747,560 to 2,748,969
_2599
HP15_2600: HP15_2600 - isopropylmalate isomerase large subunit, at 2,748,984 to 2,749,379
_2600
HP15_2601: HP15_2601 - N-carbamoylsarcosine amidase, at 2,749,399 to 2,749,989
_2601
HP15_2602: HP15_2602 - hydantoin utilization protein B, at 2,749,989 to 2,751,860
_2602
Position (kb)
2749
2750 Strain fitness (log2 ratio)
-1
0
1 at 2748.427 kb on + strand, within HP15_2599 at 2748.451 kb on - strand, within HP15_2599 at 2748.471 kb on + strand, within HP15_2599 at 2748.597 kb on - strand, within HP15_2599 at 2748.604 kb on + strand, within HP15_2599 at 2748.604 kb on + strand, within HP15_2599 at 2748.604 kb on + strand, within HP15_2599 at 2748.612 kb on - strand, within HP15_2599 at 2748.615 kb on + strand, within HP15_2599 at 2748.623 kb on - strand, within HP15_2599 at 2748.887 kb on + strand at 2748.887 kb on + strand at 2748.887 kb on + strand at 2748.887 kb on + strand at 2748.887 kb on + strand at 2748.895 kb on - strand at 2748.962 kb on - strand at 2748.973 kb on - strand at 2749.114 kb on + strand, within HP15_2600 at 2749.122 kb on - strand, within HP15_2600 at 2749.192 kb on + strand, within HP15_2600 at 2749.430 kb on + strand at 2749.495 kb on + strand, within HP15_2601 at 2749.576 kb on - strand, within HP15_2601 at 2749.638 kb on - strand, within HP15_2601 at 2749.701 kb on + strand, within HP15_2601 at 2749.898 kb on - strand, within HP15_2601 at 2749.997 kb on + strand at 2749.997 kb on + strand at 2749.997 kb on + strand at 2750.005 kb on - strand at 2750.007 kb on + strand at 2750.031 kb on + strand at 2750.084 kb on + strand at 2750.086 kb on + strand at 2750.091 kb on - strand at 2750.094 kb on - strand at 2750.356 kb on - strand, within HP15_2602 at 2750.370 kb on - strand, within HP15_2602 at 2750.419 kb on + strand, within HP15_2602 at 2750.610 kb on + strand, within HP15_2602 at 2750.652 kb on + strand, within HP15_2602 at 2750.819 kb on + strand, within HP15_2602 at 2750.864 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.871 kb on - strand, within HP15_2602 at 2750.918 kb on + strand, within HP15_2602
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.008 mg/ml remove 2,748,427 + HP15_2599 0.61 +0.1 2,748,451 - HP15_2599 0.63 +0.2 2,748,471 + HP15_2599 0.65 +1.6 2,748,597 - HP15_2599 0.74 -0.0 2,748,604 + HP15_2599 0.74 +0.6 2,748,604 + HP15_2599 0.74 -0.1 2,748,604 + HP15_2599 0.74 -0.4 2,748,612 - HP15_2599 0.75 -0.0 2,748,615 + HP15_2599 0.75 +0.3 2,748,623 - HP15_2599 0.75 -0.0 2,748,887 + +0.8 2,748,887 + -0.5 2,748,887 + +1.1 2,748,887 + +1.0 2,748,887 + -1.2 2,748,895 - -0.3 2,748,962 - +0.5 2,748,973 - +0.7 2,749,114 + HP15_2600 0.33 +0.3 2,749,122 - HP15_2600 0.35 +0.2 2,749,192 + HP15_2600 0.53 -0.6 2,749,430 + +0.6 2,749,495 + HP15_2601 0.16 +1.3 2,749,576 - HP15_2601 0.30 +1.2 2,749,638 - HP15_2601 0.40 -0.6 2,749,701 + HP15_2601 0.51 +0.1 2,749,898 - HP15_2601 0.84 +0.4 2,749,997 + -0.2 2,749,997 + +0.9 2,749,997 + +1.7 2,750,005 - -1.1 2,750,007 + +0.6 2,750,031 + -1.2 2,750,084 + -0.0 2,750,086 + -0.1 2,750,091 - +1.0 2,750,094 - -1.2 2,750,356 - HP15_2602 0.20 -0.4 2,750,370 - HP15_2602 0.20 -1.0 2,750,419 + HP15_2602 0.23 -0.5 2,750,610 + HP15_2602 0.33 -0.1 2,750,652 + HP15_2602 0.35 +1.3 2,750,819 + HP15_2602 0.44 -0.0 2,750,864 + HP15_2602 0.47 -0.8 2,750,868 + HP15_2602 0.47 -1.0 2,750,868 + HP15_2602 0.47 +0.1 2,750,868 + HP15_2602 0.47 +0.1 2,750,871 - HP15_2602 0.47 +0.7 2,750,918 + HP15_2602 0.50 -0.6
Or see this region's nucleotide sequence