Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25940

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c25930 and PGA1_c25940 overlap by 4 nucleotidesPGA1_c25940 and PGA1_c25950 are separated by 4 nucleotidesPGA1_c25950 and PGA1_c25960 are separated by 9 nucleotidesPGA1_c25960 and PGA1_c25970 overlap by 4 nucleotides PGA1_c25930: PGA1_c25930 - putative siderophore interacting protein, at 2,702,140 to 2,703,192 _c25930 PGA1_c25940: PGA1_c25940 - putative integral membrane protein, at 2,703,189 to 2,704,199 _c25940 PGA1_c25950: PGA1_c25950 - putative biopolymer transport protein, at 2,704,204 to 2,704,581 _c25950 PGA1_c25960: PGA1_c25960 - putative biopolymer transport protein, at 2,704,591 to 2,704,968 _c25960 PGA1_c25970: PGA1_c25970 - tonB-like protein, at 2,704,965 to 2,705,828 _c25970 Position (kb) 2703 2704 2705Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2702.287 kb on + strand, within PGA1_c25930at 2702.287 kb on - strand, within PGA1_c25930at 2702.294 kb on + strand, within PGA1_c25930at 2702.307 kb on - strand, within PGA1_c25930at 2702.322 kb on + strand, within PGA1_c25930at 2702.330 kb on - strand, within PGA1_c25930at 2702.330 kb on - strand, within PGA1_c25930at 2702.356 kb on - strand, within PGA1_c25930at 2702.424 kb on + strand, within PGA1_c25930at 2702.424 kb on + strand, within PGA1_c25930at 2702.424 kb on + strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.469 kb on + strand, within PGA1_c25930at 2702.561 kb on + strand, within PGA1_c25930at 2702.561 kb on + strand, within PGA1_c25930at 2702.569 kb on - strand, within PGA1_c25930at 2702.636 kb on - strand, within PGA1_c25930at 2702.655 kb on + strand, within PGA1_c25930at 2702.661 kb on + strand, within PGA1_c25930at 2702.685 kb on - strand, within PGA1_c25930at 2702.685 kb on - strand, within PGA1_c25930at 2702.685 kb on - strand, within PGA1_c25930at 2702.692 kb on + strand, within PGA1_c25930at 2702.692 kb on + strand, within PGA1_c25930at 2702.692 kb on + strand, within PGA1_c25930at 2702.699 kb on - strand, within PGA1_c25930at 2702.700 kb on - strand, within PGA1_c25930at 2702.743 kb on - strand, within PGA1_c25930at 2702.798 kb on + strandat 2703.017 kb on + strand, within PGA1_c25930at 2703.017 kb on + strand, within PGA1_c25930at 2703.025 kb on - strand, within PGA1_c25930at 2703.026 kb on + strand, within PGA1_c25930at 2703.128 kb on + strandat 2703.136 kb on - strandat 2703.138 kb on + strandat 2703.138 kb on + strandat 2703.267 kb on + strandat 2703.275 kb on - strandat 2703.367 kb on + strand, within PGA1_c25940at 2703.381 kb on + strand, within PGA1_c25940at 2703.460 kb on + strand, within PGA1_c25940at 2703.461 kb on - strand, within PGA1_c25940at 2703.468 kb on - strand, within PGA1_c25940at 2703.471 kb on - strand, within PGA1_c25940at 2703.502 kb on - strand, within PGA1_c25940at 2703.726 kb on - strand, within PGA1_c25940at 2703.764 kb on - strand, within PGA1_c25940at 2703.786 kb on + strand, within PGA1_c25940at 2703.793 kb on + strand, within PGA1_c25940at 2703.810 kb on + strand, within PGA1_c25940at 2703.883 kb on + strand, within PGA1_c25940at 2703.891 kb on - strand, within PGA1_c25940at 2703.916 kb on + strand, within PGA1_c25940at 2703.927 kb on + strand, within PGA1_c25940at 2703.948 kb on + strand, within PGA1_c25940at 2703.961 kb on - strand, within PGA1_c25940at 2703.992 kb on + strand, within PGA1_c25940at 2704.000 kb on - strand, within PGA1_c25940at 2704.038 kb on + strandat 2704.069 kb on - strand, within PGA1_c25940at 2704.096 kb on + strandat 2704.104 kb on - strandat 2704.112 kb on - strandat 2704.129 kb on + strandat 2704.137 kb on - strandat 2704.194 kb on + strandat 2704.194 kb on + strandat 2704.197 kb on - strandat 2704.329 kb on - strand, within PGA1_c25950at 2704.353 kb on + strand, within PGA1_c25950at 2704.363 kb on + strand, within PGA1_c25950at 2704.400 kb on - strand, within PGA1_c25950at 2704.400 kb on - strand, within PGA1_c25950at 2704.493 kb on + strand, within PGA1_c25950at 2704.493 kb on + strand, within PGA1_c25950at 2704.501 kb on - strand, within PGA1_c25950at 2704.596 kb on - strandat 2704.644 kb on + strand, within PGA1_c25960at 2704.692 kb on - strand, within PGA1_c25960at 2704.700 kb on + strand, within PGA1_c25960at 2704.700 kb on + strand, within PGA1_c25960at 2704.708 kb on - strand, within PGA1_c25960at 2704.708 kb on - strand, within PGA1_c25960at 2704.708 kb on - strand, within PGA1_c25960at 2704.775 kb on - strand, within PGA1_c25960at 2704.789 kb on - strand, within PGA1_c25960at 2704.856 kb on - strand, within PGA1_c25960at 2704.889 kb on + strand, within PGA1_c25960at 2704.925 kb on + strand, within PGA1_c25960at 2704.975 kb on + strandat 2705.033 kb on - strandat 2705.153 kb on - strand, within PGA1_c25970at 2705.173 kb on + strand, within PGA1_c25970at 2705.173 kb on + strand, within PGA1_c25970at 2705.191 kb on - strand, within PGA1_c25970

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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2,702,287 + PGA1_c25930 0.14 -2.0
2,702,287 - PGA1_c25930 0.14 -1.2
2,702,294 + PGA1_c25930 0.15 -2.0
2,702,307 - PGA1_c25930 0.16 -0.3
2,702,322 + PGA1_c25930 0.17 -0.8
2,702,330 - PGA1_c25930 0.18 -1.0
2,702,330 - PGA1_c25930 0.18 +0.2
2,702,356 - PGA1_c25930 0.21 +0.3
2,702,424 + PGA1_c25930 0.27 +0.0
2,702,424 + PGA1_c25930 0.27 -0.7
2,702,424 + PGA1_c25930 0.27 +0.2
2,702,432 - PGA1_c25930 0.28 -2.0
2,702,432 - PGA1_c25930 0.28 +0.7
2,702,432 - PGA1_c25930 0.28 +0.3
2,702,432 - PGA1_c25930 0.28 +0.3
2,702,432 - PGA1_c25930 0.28 +0.0
2,702,432 - PGA1_c25930 0.28 -0.5
2,702,432 - PGA1_c25930 0.28 -0.2
2,702,469 + PGA1_c25930 0.31 -1.0
2,702,561 + PGA1_c25930 0.40 +1.0
2,702,561 + PGA1_c25930 0.40 -2.8
2,702,569 - PGA1_c25930 0.41 -0.9
2,702,636 - PGA1_c25930 0.47 -0.2
2,702,655 + PGA1_c25930 0.49 +0.9
2,702,661 + PGA1_c25930 0.49 -2.4
2,702,685 - PGA1_c25930 0.52 +1.0
2,702,685 - PGA1_c25930 0.52 +0.7
2,702,685 - PGA1_c25930 0.52 +1.0
2,702,692 + PGA1_c25930 0.52 +0.0
2,702,692 + PGA1_c25930 0.52 +0.1
2,702,692 + PGA1_c25930 0.52 +1.0
2,702,699 - PGA1_c25930 0.53 -1.7
2,702,700 - PGA1_c25930 0.53 +1.0
2,702,743 - PGA1_c25930 0.57 -2.8
2,702,798 + +2.0
2,703,017 + PGA1_c25930 0.83 +1.0
2,703,017 + PGA1_c25930 0.83 +3.0
2,703,025 - PGA1_c25930 0.84 +0.7
2,703,026 + PGA1_c25930 0.84 -1.2
2,703,128 + +0.0
2,703,136 - +0.0
2,703,138 + +1.7
2,703,138 + -0.5
2,703,267 + -0.6
2,703,275 - +0.3
2,703,367 + PGA1_c25940 0.18 +0.2
2,703,381 + PGA1_c25940 0.19 +0.7
2,703,460 + PGA1_c25940 0.27 -0.3
2,703,461 - PGA1_c25940 0.27 -0.7
2,703,468 - PGA1_c25940 0.28 +0.8
2,703,471 - PGA1_c25940 0.28 +1.0
2,703,502 - PGA1_c25940 0.31 -0.4
2,703,726 - PGA1_c25940 0.53 -1.7
2,703,764 - PGA1_c25940 0.57 +0.4
2,703,786 + PGA1_c25940 0.59 -0.4
2,703,793 + PGA1_c25940 0.60 -0.5
2,703,810 + PGA1_c25940 0.61 +0.2
2,703,883 + PGA1_c25940 0.69 +0.7
2,703,891 - PGA1_c25940 0.69 +0.6
2,703,916 + PGA1_c25940 0.72 -1.9
2,703,927 + PGA1_c25940 0.73 -0.3
2,703,948 + PGA1_c25940 0.75 -0.6
2,703,961 - PGA1_c25940 0.76 -1.0
2,703,992 + PGA1_c25940 0.79 -1.0
2,704,000 - PGA1_c25940 0.80 -0.1
2,704,038 + +1.7
2,704,069 - PGA1_c25940 0.87 -0.7
2,704,096 + +1.0
2,704,104 - -1.6
2,704,112 - -0.9
2,704,129 + +0.6
2,704,137 - -0.6
2,704,194 + +0.0
2,704,194 + -0.2
2,704,197 - -0.6
2,704,329 - PGA1_c25950 0.33 +1.0
2,704,353 + PGA1_c25950 0.39 -0.8
2,704,363 + PGA1_c25950 0.42 -2.2
2,704,400 - PGA1_c25950 0.52 -1.6
2,704,400 - PGA1_c25950 0.52 -1.2
2,704,493 + PGA1_c25950 0.76 -1.7
2,704,493 + PGA1_c25950 0.76 -0.8
2,704,501 - PGA1_c25950 0.79 -1.6
2,704,596 - -0.8
2,704,644 + PGA1_c25960 0.14 +2.0
2,704,692 - PGA1_c25960 0.27 +0.6
2,704,700 + PGA1_c25960 0.29 +0.3
2,704,700 + PGA1_c25960 0.29 +1.0
2,704,708 - PGA1_c25960 0.31 -1.8
2,704,708 - PGA1_c25960 0.31 -2.7
2,704,708 - PGA1_c25960 0.31 -0.6
2,704,775 - PGA1_c25960 0.49 +0.7
2,704,789 - PGA1_c25960 0.52 -1.2
2,704,856 - PGA1_c25960 0.70 +0.0
2,704,889 + PGA1_c25960 0.79 +0.0
2,704,925 + PGA1_c25960 0.88 -1.7
2,704,975 + -0.2
2,705,033 - -0.8
2,705,153 - PGA1_c25970 0.22 -1.9
2,705,173 + PGA1_c25970 0.24 -2.6
2,705,173 + PGA1_c25970 0.24 -1.0
2,705,191 - PGA1_c25970 0.26 +1.0

Or see this region's nucleotide sequence