Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25930

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c25910 and PGA1_c25920 overlap by 1 nucleotidesPGA1_c25920 and PGA1_c25930 are separated by 11 nucleotidesPGA1_c25930 and PGA1_c25940 overlap by 4 nucleotides PGA1_c25910: PGA1_c25910 - ferric enterobactin transport system permease protein FepG, at 2,700,330 to 2,701,346 _c25910 PGA1_c25920: PGA1_c25920 - ferric enterobactin transport ATP-binding protein FepC, at 2,701,346 to 2,702,128 _c25920 PGA1_c25930: PGA1_c25930 - putative siderophore interacting protein, at 2,702,140 to 2,703,192 _c25930 PGA1_c25940: PGA1_c25940 - putative integral membrane protein, at 2,703,189 to 2,704,199 _c25940 Position (kb) 2702 2703 2704Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2701.299 kb on + strandat 2701.313 kb on + strandat 2701.316 kb on - strandat 2701.317 kb on - strandat 2701.403 kb on + strandat 2701.447 kb on - strand, within PGA1_c25920at 2701.515 kb on - strand, within PGA1_c25920at 2701.543 kb on - strand, within PGA1_c25920at 2701.662 kb on + strand, within PGA1_c25920at 2701.689 kb on + strand, within PGA1_c25920at 2701.745 kb on + strand, within PGA1_c25920at 2701.817 kb on + strand, within PGA1_c25920at 2701.888 kb on + strand, within PGA1_c25920at 2701.906 kb on + strand, within PGA1_c25920at 2701.967 kb on + strand, within PGA1_c25920at 2702.016 kb on - strand, within PGA1_c25920at 2702.050 kb on + strandat 2702.066 kb on + strandat 2702.071 kb on + strandat 2702.079 kb on - strandat 2702.114 kb on - strandat 2702.174 kb on + strandat 2702.174 kb on + strandat 2702.182 kb on - strandat 2702.287 kb on + strand, within PGA1_c25930at 2702.287 kb on - strand, within PGA1_c25930at 2702.294 kb on + strand, within PGA1_c25930at 2702.307 kb on - strand, within PGA1_c25930at 2702.322 kb on + strand, within PGA1_c25930at 2702.330 kb on - strand, within PGA1_c25930at 2702.330 kb on - strand, within PGA1_c25930at 2702.356 kb on - strand, within PGA1_c25930at 2702.424 kb on + strand, within PGA1_c25930at 2702.424 kb on + strand, within PGA1_c25930at 2702.424 kb on + strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.432 kb on - strand, within PGA1_c25930at 2702.469 kb on + strand, within PGA1_c25930at 2702.561 kb on + strand, within PGA1_c25930at 2702.561 kb on + strand, within PGA1_c25930at 2702.569 kb on - strand, within PGA1_c25930at 2702.636 kb on - strand, within PGA1_c25930at 2702.655 kb on + strand, within PGA1_c25930at 2702.661 kb on + strand, within PGA1_c25930at 2702.685 kb on - strand, within PGA1_c25930at 2702.685 kb on - strand, within PGA1_c25930at 2702.685 kb on - strand, within PGA1_c25930at 2702.692 kb on + strand, within PGA1_c25930at 2702.692 kb on + strand, within PGA1_c25930at 2702.692 kb on + strand, within PGA1_c25930at 2702.699 kb on - strand, within PGA1_c25930at 2702.700 kb on - strand, within PGA1_c25930at 2702.743 kb on - strand, within PGA1_c25930at 2702.798 kb on + strandat 2703.017 kb on + strand, within PGA1_c25930at 2703.017 kb on + strand, within PGA1_c25930at 2703.025 kb on - strand, within PGA1_c25930at 2703.026 kb on + strand, within PGA1_c25930at 2703.128 kb on + strandat 2703.136 kb on - strandat 2703.138 kb on + strandat 2703.138 kb on + strandat 2703.267 kb on + strandat 2703.275 kb on - strandat 2703.367 kb on + strand, within PGA1_c25940at 2703.381 kb on + strand, within PGA1_c25940at 2703.460 kb on + strand, within PGA1_c25940at 2703.461 kb on - strand, within PGA1_c25940at 2703.468 kb on - strand, within PGA1_c25940at 2703.471 kb on - strand, within PGA1_c25940at 2703.502 kb on - strand, within PGA1_c25940at 2703.726 kb on - strand, within PGA1_c25940at 2703.764 kb on - strand, within PGA1_c25940at 2703.786 kb on + strand, within PGA1_c25940at 2703.793 kb on + strand, within PGA1_c25940at 2703.810 kb on + strand, within PGA1_c25940at 2703.883 kb on + strand, within PGA1_c25940at 2703.891 kb on - strand, within PGA1_c25940at 2703.916 kb on + strand, within PGA1_c25940at 2703.927 kb on + strand, within PGA1_c25940at 2703.948 kb on + strand, within PGA1_c25940at 2703.961 kb on - strand, within PGA1_c25940at 2703.992 kb on + strand, within PGA1_c25940at 2704.000 kb on - strand, within PGA1_c25940at 2704.038 kb on + strandat 2704.069 kb on - strand, within PGA1_c25940at 2704.096 kb on + strandat 2704.104 kb on - strandat 2704.112 kb on - strandat 2704.129 kb on + strandat 2704.137 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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2,701,299 + -0.5
2,701,313 + +0.0
2,701,316 - -0.2
2,701,317 - +0.8
2,701,403 + +0.0
2,701,447 - PGA1_c25920 0.13 -1.0
2,701,515 - PGA1_c25920 0.22 -0.8
2,701,543 - PGA1_c25920 0.25 +1.7
2,701,662 + PGA1_c25920 0.40 +1.9
2,701,689 + PGA1_c25920 0.44 -0.9
2,701,745 + PGA1_c25920 0.51 +0.3
2,701,817 + PGA1_c25920 0.60 +0.2
2,701,888 + PGA1_c25920 0.69 -2.4
2,701,906 + PGA1_c25920 0.72 +1.4
2,701,967 + PGA1_c25920 0.79 -1.0
2,702,016 - PGA1_c25920 0.86 +0.3
2,702,050 + +0.8
2,702,066 + +2.6
2,702,071 + +0.5
2,702,079 - -0.3
2,702,114 - -2.2
2,702,174 + +0.5
2,702,174 + -0.5
2,702,182 - -1.6
2,702,287 + PGA1_c25930 0.14 -2.0
2,702,287 - PGA1_c25930 0.14 -1.2
2,702,294 + PGA1_c25930 0.15 -2.0
2,702,307 - PGA1_c25930 0.16 -0.3
2,702,322 + PGA1_c25930 0.17 -0.8
2,702,330 - PGA1_c25930 0.18 -1.0
2,702,330 - PGA1_c25930 0.18 +0.2
2,702,356 - PGA1_c25930 0.21 +0.3
2,702,424 + PGA1_c25930 0.27 +0.0
2,702,424 + PGA1_c25930 0.27 -0.7
2,702,424 + PGA1_c25930 0.27 +0.2
2,702,432 - PGA1_c25930 0.28 -2.0
2,702,432 - PGA1_c25930 0.28 +0.7
2,702,432 - PGA1_c25930 0.28 +0.3
2,702,432 - PGA1_c25930 0.28 +0.3
2,702,432 - PGA1_c25930 0.28 +0.0
2,702,432 - PGA1_c25930 0.28 -0.5
2,702,432 - PGA1_c25930 0.28 -0.2
2,702,469 + PGA1_c25930 0.31 -1.0
2,702,561 + PGA1_c25930 0.40 +1.0
2,702,561 + PGA1_c25930 0.40 -2.8
2,702,569 - PGA1_c25930 0.41 -0.9
2,702,636 - PGA1_c25930 0.47 -0.2
2,702,655 + PGA1_c25930 0.49 +0.9
2,702,661 + PGA1_c25930 0.49 -2.4
2,702,685 - PGA1_c25930 0.52 +1.0
2,702,685 - PGA1_c25930 0.52 +0.7
2,702,685 - PGA1_c25930 0.52 +1.0
2,702,692 + PGA1_c25930 0.52 +0.0
2,702,692 + PGA1_c25930 0.52 +0.1
2,702,692 + PGA1_c25930 0.52 +1.0
2,702,699 - PGA1_c25930 0.53 -1.7
2,702,700 - PGA1_c25930 0.53 +1.0
2,702,743 - PGA1_c25930 0.57 -2.8
2,702,798 + +2.0
2,703,017 + PGA1_c25930 0.83 +1.0
2,703,017 + PGA1_c25930 0.83 +3.0
2,703,025 - PGA1_c25930 0.84 +0.7
2,703,026 + PGA1_c25930 0.84 -1.2
2,703,128 + +0.0
2,703,136 - +0.0
2,703,138 + +1.7
2,703,138 + -0.5
2,703,267 + -0.6
2,703,275 - +0.3
2,703,367 + PGA1_c25940 0.18 +0.2
2,703,381 + PGA1_c25940 0.19 +0.7
2,703,460 + PGA1_c25940 0.27 -0.3
2,703,461 - PGA1_c25940 0.27 -0.7
2,703,468 - PGA1_c25940 0.28 +0.8
2,703,471 - PGA1_c25940 0.28 +1.0
2,703,502 - PGA1_c25940 0.31 -0.4
2,703,726 - PGA1_c25940 0.53 -1.7
2,703,764 - PGA1_c25940 0.57 +0.4
2,703,786 + PGA1_c25940 0.59 -0.4
2,703,793 + PGA1_c25940 0.60 -0.5
2,703,810 + PGA1_c25940 0.61 +0.2
2,703,883 + PGA1_c25940 0.69 +0.7
2,703,891 - PGA1_c25940 0.69 +0.6
2,703,916 + PGA1_c25940 0.72 -1.9
2,703,927 + PGA1_c25940 0.73 -0.3
2,703,948 + PGA1_c25940 0.75 -0.6
2,703,961 - PGA1_c25940 0.76 -1.0
2,703,992 + PGA1_c25940 0.79 -1.0
2,704,000 - PGA1_c25940 0.80 -0.1
2,704,038 + +1.7
2,704,069 - PGA1_c25940 0.87 -0.7
2,704,096 + +1.0
2,704,104 - -1.6
2,704,112 - -0.9
2,704,129 + +0.6
2,704,137 - -0.6

Or see this region's nucleotide sequence