Experiment: m.b. Furfuryl Alcohol 0.064 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c22240 and PGA1_c22250 overlap by 4 nucleotides PGA1_c22250 and PGA1_c22260 are separated by 189 nucleotides PGA1_c22260 and PGA1_c22270 are separated by 9 nucleotides PGA1_c22270 and PGA1_c22280 overlap by 20 nucleotides PGA1_c22280 and PGA1_c22290 are separated by 1 nucleotides
PGA1_c22240: PGA1_c22240 - hypothetical protein, at 2,311,615 to 2,311,917
_c22240
PGA1_c22250: PGA1_c22250 - hypothetical protein, at 2,311,914 to 2,312,579
_c22250
PGA1_c22260: PGA1_c22260 - hypothetical protein, at 2,312,769 to 2,313,146
_c22260
PGA1_c22270: PGA1_c22270 - Protein of unknown function (DUF1353)., at 2,313,156 to 2,313,500
_c22270
PGA1_c22280: PGA1_c22280 - hypothetical protein, at 2,313,481 to 2,313,954
_c22280
PGA1_c22290: PGA1_c22290 - hypothetical protein, at 2,313,956 to 2,314,681
_c22290
Position (kb)
2312
2313
2314 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2311.777 kb on - strand, within PGA1_c22240 at 2311.836 kb on - strand, within PGA1_c22240 at 2311.838 kb on - strand, within PGA1_c22240 at 2312.082 kb on + strand, within PGA1_c22250 at 2312.082 kb on + strand, within PGA1_c22250 at 2312.118 kb on + strand, within PGA1_c22250 at 2312.149 kb on + strand, within PGA1_c22250 at 2312.153 kb on + strand, within PGA1_c22250 at 2312.287 kb on + strand, within PGA1_c22250 at 2312.311 kb on + strand, within PGA1_c22250 at 2312.327 kb on + strand, within PGA1_c22250 at 2312.400 kb on - strand, within PGA1_c22250 at 2312.405 kb on - strand, within PGA1_c22250 at 2312.438 kb on - strand, within PGA1_c22250 at 2312.462 kb on + strand, within PGA1_c22250 at 2312.540 kb on - strand at 2312.540 kb on - strand at 2312.540 kb on - strand at 2312.566 kb on - strand at 2312.629 kb on + strand at 2312.632 kb on - strand at 2312.637 kb on - strand at 2312.773 kb on - strand at 2312.778 kb on - strand at 2312.839 kb on - strand, within PGA1_c22260 at 2312.865 kb on - strand, within PGA1_c22260 at 2312.886 kb on + strand, within PGA1_c22260 at 2312.930 kb on - strand, within PGA1_c22260 at 2312.949 kb on - strand, within PGA1_c22260 at 2312.956 kb on + strand, within PGA1_c22260 at 2312.974 kb on - strand, within PGA1_c22260 at 2312.974 kb on - strand, within PGA1_c22260 at 2312.984 kb on + strand, within PGA1_c22260 at 2313.094 kb on - strand, within PGA1_c22260 at 2313.154 kb on + strand at 2313.223 kb on + strand, within PGA1_c22270 at 2313.258 kb on + strand, within PGA1_c22270 at 2313.258 kb on + strand, within PGA1_c22270 at 2313.261 kb on - strand, within PGA1_c22270 at 2313.263 kb on + strand, within PGA1_c22270 at 2313.291 kb on + strand, within PGA1_c22270 at 2313.291 kb on + strand, within PGA1_c22270 at 2313.418 kb on + strand, within PGA1_c22270 at 2313.418 kb on + strand, within PGA1_c22270 at 2313.421 kb on - strand, within PGA1_c22270 at 2313.450 kb on + strand, within PGA1_c22270 at 2313.464 kb on - strand, within PGA1_c22270 at 2313.486 kb on + strand at 2313.518 kb on + strand at 2313.604 kb on - strand, within PGA1_c22280 at 2313.635 kb on - strand, within PGA1_c22280 at 2313.635 kb on - strand, within PGA1_c22280 at 2313.698 kb on + strand, within PGA1_c22280 at 2313.720 kb on + strand, within PGA1_c22280 at 2313.732 kb on - strand, within PGA1_c22280 at 2313.762 kb on - strand, within PGA1_c22280 at 2313.764 kb on + strand, within PGA1_c22280 at 2313.767 kb on - strand, within PGA1_c22280 at 2313.767 kb on - strand, within PGA1_c22280 at 2313.772 kb on - strand, within PGA1_c22280 at 2313.844 kb on + strand, within PGA1_c22280 at 2313.870 kb on - strand, within PGA1_c22280 at 2313.929 kb on - strand at 2313.933 kb on - strand at 2313.954 kb on + strand at 2313.954 kb on + strand at 2313.962 kb on - strand at 2313.962 kb on - strand at 2313.962 kb on - strand at 2313.982 kb on + strand at 2314.019 kb on + strand at 2314.099 kb on - strand, within PGA1_c22290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol% remove 2,311,777 - PGA1_c22240 0.53 +2.3 2,311,836 - PGA1_c22240 0.73 -1.1 2,311,838 - PGA1_c22240 0.74 -2.0 2,312,082 + PGA1_c22250 0.25 -0.5 2,312,082 + PGA1_c22250 0.25 +0.9 2,312,118 + PGA1_c22250 0.31 +0.9 2,312,149 + PGA1_c22250 0.35 -0.9 2,312,153 + PGA1_c22250 0.36 -1.8 2,312,287 + PGA1_c22250 0.56 -0.2 2,312,311 + PGA1_c22250 0.60 +0.9 2,312,327 + PGA1_c22250 0.62 +0.5 2,312,400 - PGA1_c22250 0.73 -0.8 2,312,405 - PGA1_c22250 0.74 +0.2 2,312,438 - PGA1_c22250 0.79 +0.2 2,312,462 + PGA1_c22250 0.82 +0.7 2,312,540 - -1.5 2,312,540 - +0.2 2,312,540 - -0.1 2,312,566 - -0.4 2,312,629 + -0.6 2,312,632 - -0.5 2,312,637 - +0.6 2,312,773 - -0.5 2,312,778 - -0.6 2,312,839 - PGA1_c22260 0.19 -2.3 2,312,865 - PGA1_c22260 0.25 -1.4 2,312,886 + PGA1_c22260 0.31 +0.5 2,312,930 - PGA1_c22260 0.43 +3.2 2,312,949 - PGA1_c22260 0.48 -0.3 2,312,956 + PGA1_c22260 0.49 -1.2 2,312,974 - PGA1_c22260 0.54 -0.6 2,312,974 - PGA1_c22260 0.54 -0.3 2,312,984 + PGA1_c22260 0.57 +0.1 2,313,094 - PGA1_c22260 0.86 -1.3 2,313,154 + +0.2 2,313,223 + PGA1_c22270 0.19 +0.7 2,313,258 + PGA1_c22270 0.30 -0.9 2,313,258 + PGA1_c22270 0.30 +1.4 2,313,261 - PGA1_c22270 0.30 +0.6 2,313,263 + PGA1_c22270 0.31 +1.9 2,313,291 + PGA1_c22270 0.39 -0.4 2,313,291 + PGA1_c22270 0.39 -0.6 2,313,418 + PGA1_c22270 0.76 +0.6 2,313,418 + PGA1_c22270 0.76 +0.0 2,313,421 - PGA1_c22270 0.77 -1.2 2,313,450 + PGA1_c22270 0.85 -0.6 2,313,464 - PGA1_c22270 0.89 +0.5 2,313,486 + +0.1 2,313,518 + -1.0 2,313,604 - PGA1_c22280 0.26 +0.5 2,313,635 - PGA1_c22280 0.32 -0.4 2,313,635 - PGA1_c22280 0.32 +0.5 2,313,698 + PGA1_c22280 0.46 -0.3 2,313,720 + PGA1_c22280 0.50 -0.2 2,313,732 - PGA1_c22280 0.53 +0.9 2,313,762 - PGA1_c22280 0.59 +1.6 2,313,764 + PGA1_c22280 0.60 -1.7 2,313,767 - PGA1_c22280 0.60 -0.4 2,313,767 - PGA1_c22280 0.60 +1.4 2,313,772 - PGA1_c22280 0.61 -1.3 2,313,844 + PGA1_c22280 0.77 -0.1 2,313,870 - PGA1_c22280 0.82 +0.7 2,313,929 - +0.0 2,313,933 - -2.1 2,313,954 + -1.0 2,313,954 + -1.1 2,313,962 - +0.4 2,313,962 - -0.1 2,313,962 - +0.8 2,313,982 + +1.4 2,314,019 + -1.8 2,314,099 - PGA1_c22290 0.20 +0.2
Or see this region's nucleotide sequence