Experiment: m.b. Furfuryl Alcohol 0.064 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21770 and PGA1_c21780 are separated by 190 nucleotides PGA1_c21780 and PGA1_c21790 are separated by 112 nucleotides
PGA1_c21770: PGA1_c21770 - DNA-binding regulatory protein, YebC/PmpR family, at 2,256,340 to 2,257,080
_c21770
PGA1_c21780: PGA1_c21780 - putative transporter, at 2,257,271 to 2,259,046
_c21780
PGA1_c21790: PGA1_c21790 - fumarate reductase/succinate dehydrogenase flavoprotein-like protein, at 2,259,159 to 2,260,829
_c21790
Position (kb)
2257
2258
2259
2260 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2256.300 kb on + strand at 2256.315 kb on + strand at 2256.323 kb on - strand at 2256.323 kb on - strand at 2256.325 kb on + strand at 2256.325 kb on + strand at 2256.325 kb on + strand at 2256.325 kb on + strand at 2256.325 kb on + strand at 2256.325 kb on + strand at 2256.325 kb on + strand at 2256.333 kb on - strand at 2256.338 kb on - strand at 2256.343 kb on - strand at 2256.343 kb on - strand at 2256.343 kb on - strand at 2257.076 kb on + strand at 2257.090 kb on - strand at 2257.165 kb on + strand at 2257.165 kb on + strand at 2257.165 kb on + strand at 2257.165 kb on + strand at 2257.165 kb on + strand at 2257.173 kb on - strand at 2257.173 kb on - strand at 2257.173 kb on - strand at 2257.173 kb on - strand at 2257.173 kb on - strand at 2257.173 kb on - strand at 2257.173 kb on - strand at 2257.202 kb on + strand at 2257.202 kb on + strand at 2257.202 kb on + strand at 2257.202 kb on + strand at 2257.202 kb on + strand at 2257.207 kb on - strand at 2257.209 kb on + strand at 2257.210 kb on - strand at 2257.210 kb on - strand at 2257.210 kb on - strand at 2257.210 kb on - strand at 2257.212 kb on + strand at 2257.217 kb on - strand at 2257.311 kb on - strand at 2257.311 kb on - strand at 2257.313 kb on + strand at 2257.321 kb on - strand at 2257.385 kb on + strand at 2257.452 kb on - strand, within PGA1_c21780 at 2257.498 kb on - strand, within PGA1_c21780 at 2257.530 kb on + strand, within PGA1_c21780 at 2257.530 kb on + strand, within PGA1_c21780 at 2257.530 kb on + strand, within PGA1_c21780 at 2257.530 kb on + strand, within PGA1_c21780 at 2257.538 kb on - strand, within PGA1_c21780 at 2257.538 kb on - strand, within PGA1_c21780 at 2257.626 kb on - strand, within PGA1_c21780 at 2257.641 kb on - strand, within PGA1_c21780 at 2257.682 kb on - strand, within PGA1_c21780 at 2257.751 kb on + strand, within PGA1_c21780 at 2257.769 kb on + strand, within PGA1_c21780 at 2257.774 kb on + strand, within PGA1_c21780 at 2257.781 kb on + strand, within PGA1_c21780 at 2257.783 kb on - strand, within PGA1_c21780 at 2257.857 kb on + strand, within PGA1_c21780 at 2257.904 kb on - strand, within PGA1_c21780 at 2257.918 kb on + strand, within PGA1_c21780 at 2257.918 kb on + strand, within PGA1_c21780 at 2257.918 kb on + strand, within PGA1_c21780 at 2257.947 kb on + strand, within PGA1_c21780 at 2257.947 kb on + strand, within PGA1_c21780 at 2257.947 kb on - strand, within PGA1_c21780 at 2258.018 kb on + strand, within PGA1_c21780 at 2258.026 kb on - strand, within PGA1_c21780 at 2258.130 kb on + strand, within PGA1_c21780 at 2258.170 kb on - strand, within PGA1_c21780 at 2258.290 kb on + strand, within PGA1_c21780 at 2258.352 kb on - strand, within PGA1_c21780 at 2258.418 kb on + strand, within PGA1_c21780 at 2258.498 kb on + strand, within PGA1_c21780 at 2258.560 kb on - strand, within PGA1_c21780 at 2258.613 kb on + strand, within PGA1_c21780 at 2258.624 kb on + strand, within PGA1_c21780 at 2258.642 kb on - strand, within PGA1_c21780 at 2258.642 kb on - strand, within PGA1_c21780 at 2258.665 kb on - strand, within PGA1_c21780 at 2258.665 kb on - strand, within PGA1_c21780 at 2258.665 kb on - strand, within PGA1_c21780 at 2258.735 kb on + strand, within PGA1_c21780 at 2258.743 kb on - strand, within PGA1_c21780 at 2258.838 kb on + strand, within PGA1_c21780 at 2258.838 kb on + strand, within PGA1_c21780 at 2258.838 kb on + strand, within PGA1_c21780 at 2258.838 kb on + strand, within PGA1_c21780 at 2258.846 kb on - strand, within PGA1_c21780 at 2258.846 kb on - strand, within PGA1_c21780 at 2258.846 kb on - strand, within PGA1_c21780 at 2258.928 kb on + strand at 2259.039 kb on - strand at 2259.098 kb on - strand at 2259.098 kb on - strand at 2259.099 kb on - strand at 2259.114 kb on + strand at 2259.122 kb on - strand at 2259.141 kb on - strand at 2259.165 kb on - strand at 2259.165 kb on - strand at 2259.314 kb on - strand at 2259.340 kb on + strand, within PGA1_c21790 at 2259.340 kb on + strand, within PGA1_c21790 at 2259.348 kb on - strand, within PGA1_c21790 at 2259.348 kb on - strand, within PGA1_c21790 at 2259.376 kb on - strand, within PGA1_c21790 at 2259.510 kb on - strand, within PGA1_c21790 at 2259.517 kb on + strand, within PGA1_c21790 at 2259.543 kb on - strand, within PGA1_c21790 at 2259.544 kb on - strand, within PGA1_c21790 at 2259.569 kb on + strand, within PGA1_c21790 at 2259.591 kb on + strand, within PGA1_c21790 at 2259.596 kb on + strand, within PGA1_c21790 at 2259.671 kb on - strand, within PGA1_c21790 at 2259.744 kb on + strand, within PGA1_c21790 at 2259.903 kb on + strand, within PGA1_c21790 at 2259.906 kb on - strand, within PGA1_c21790 at 2259.950 kb on + strand, within PGA1_c21790 at 2259.968 kb on + strand, within PGA1_c21790 at 2259.968 kb on + strand, within PGA1_c21790 at 2259.981 kb on + strand, within PGA1_c21790 at 2259.994 kb on - strand, within PGA1_c21790 at 2259.994 kb on - strand, within PGA1_c21790
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol% remove 2,256,300 + +0.7 2,256,315 + -1.2 2,256,323 - +1.3 2,256,323 - -0.4 2,256,325 + +0.7 2,256,325 + +2.3 2,256,325 + +1.8 2,256,325 + +1.7 2,256,325 + -0.9 2,256,325 + -0.1 2,256,325 + -1.5 2,256,333 - +0.4 2,256,338 - -2.0 2,256,343 - +1.2 2,256,343 - +0.7 2,256,343 - -0.7 2,257,076 + -0.7 2,257,090 - -0.7 2,257,165 + -0.3 2,257,165 + +1.1 2,257,165 + -2.0 2,257,165 + +0.1 2,257,165 + +1.0 2,257,173 - +0.2 2,257,173 - +0.3 2,257,173 - +0.7 2,257,173 - -0.7 2,257,173 - -0.9 2,257,173 - -1.3 2,257,173 - -0.7 2,257,202 + +0.2 2,257,202 + -0.1 2,257,202 + -0.3 2,257,202 + -1.2 2,257,202 + -0.8 2,257,207 - +0.2 2,257,209 + +0.2 2,257,210 - +0.6 2,257,210 - -0.2 2,257,210 - +1.1 2,257,210 - -0.9 2,257,212 + -0.6 2,257,217 - -0.2 2,257,311 - +1.0 2,257,311 - -1.5 2,257,313 + -0.5 2,257,321 - +0.2 2,257,385 + +0.6 2,257,452 - PGA1_c21780 0.10 -0.5 2,257,498 - PGA1_c21780 0.13 +0.6 2,257,530 + PGA1_c21780 0.15 -1.2 2,257,530 + PGA1_c21780 0.15 +0.1 2,257,530 + PGA1_c21780 0.15 -0.3 2,257,530 + PGA1_c21780 0.15 +0.0 2,257,538 - PGA1_c21780 0.15 -0.0 2,257,538 - PGA1_c21780 0.15 -0.6 2,257,626 - PGA1_c21780 0.20 -2.2 2,257,641 - PGA1_c21780 0.21 +1.8 2,257,682 - PGA1_c21780 0.23 +0.1 2,257,751 + PGA1_c21780 0.27 +0.0 2,257,769 + PGA1_c21780 0.28 +0.8 2,257,774 + PGA1_c21780 0.28 -0.9 2,257,781 + PGA1_c21780 0.29 +0.1 2,257,783 - PGA1_c21780 0.29 -2.5 2,257,857 + PGA1_c21780 0.33 +0.3 2,257,904 - PGA1_c21780 0.36 +0.6 2,257,918 + PGA1_c21780 0.36 +0.7 2,257,918 + PGA1_c21780 0.36 +0.4 2,257,918 + PGA1_c21780 0.36 -2.3 2,257,947 + PGA1_c21780 0.38 +0.7 2,257,947 + PGA1_c21780 0.38 +0.1 2,257,947 - PGA1_c21780 0.38 +1.1 2,258,018 + PGA1_c21780 0.42 +1.4 2,258,026 - PGA1_c21780 0.43 -1.3 2,258,130 + PGA1_c21780 0.48 +1.0 2,258,170 - PGA1_c21780 0.51 +0.1 2,258,290 + PGA1_c21780 0.57 +1.7 2,258,352 - PGA1_c21780 0.61 +1.5 2,258,418 + PGA1_c21780 0.65 +0.2 2,258,498 + PGA1_c21780 0.69 -0.4 2,258,560 - PGA1_c21780 0.73 +0.5 2,258,613 + PGA1_c21780 0.76 +0.7 2,258,624 + PGA1_c21780 0.76 -0.4 2,258,642 - PGA1_c21780 0.77 -0.0 2,258,642 - PGA1_c21780 0.77 -0.3 2,258,665 - PGA1_c21780 0.78 -0.2 2,258,665 - PGA1_c21780 0.78 +0.0 2,258,665 - PGA1_c21780 0.78 +0.8 2,258,735 + PGA1_c21780 0.82 -2.1 2,258,743 - PGA1_c21780 0.83 +0.8 2,258,838 + PGA1_c21780 0.88 +0.8 2,258,838 + PGA1_c21780 0.88 +0.2 2,258,838 + PGA1_c21780 0.88 +1.1 2,258,838 + PGA1_c21780 0.88 -0.2 2,258,846 - PGA1_c21780 0.89 +0.0 2,258,846 - PGA1_c21780 0.89 +0.4 2,258,846 - PGA1_c21780 0.89 -1.5 2,258,928 + -0.7 2,259,039 - -1.7 2,259,098 - -1.7 2,259,098 - -1.5 2,259,099 - +0.6 2,259,114 + -0.1 2,259,122 - -2.2 2,259,141 - +0.4 2,259,165 - -1.4 2,259,165 - -0.3 2,259,314 - +1.2 2,259,340 + PGA1_c21790 0.11 -0.4 2,259,340 + PGA1_c21790 0.11 +0.8 2,259,348 - PGA1_c21790 0.11 -2.0 2,259,348 - PGA1_c21790 0.11 -0.4 2,259,376 - PGA1_c21790 0.13 -0.4 2,259,510 - PGA1_c21790 0.21 +0.2 2,259,517 + PGA1_c21790 0.21 +0.7 2,259,543 - PGA1_c21790 0.23 +0.6 2,259,544 - PGA1_c21790 0.23 +0.3 2,259,569 + PGA1_c21790 0.25 -0.9 2,259,591 + PGA1_c21790 0.26 -0.0 2,259,596 + PGA1_c21790 0.26 +0.8 2,259,671 - PGA1_c21790 0.31 -0.2 2,259,744 + PGA1_c21790 0.35 -2.0 2,259,903 + PGA1_c21790 0.45 -0.2 2,259,906 - PGA1_c21790 0.45 -1.2 2,259,950 + PGA1_c21790 0.47 +0.3 2,259,968 + PGA1_c21790 0.48 +1.0 2,259,968 + PGA1_c21790 0.48 +1.3 2,259,981 + PGA1_c21790 0.49 -0.5 2,259,994 - PGA1_c21790 0.50 +0.5 2,259,994 - PGA1_c21790 0.50 -1.2
Or see this region's nucleotide sequence