Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18310

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c18300 and PGA1_c18310 overlap by 1 nucleotidesPGA1_c18310 and PGA1_c18320 overlap by 8 nucleotidesPGA1_c18320 and PGA1_c18330 overlap by 8 nucleotides PGA1_c18300: PGA1_c18300 - hypothetical protein, at 1,912,747 to 1,913,904 _c18300 PGA1_c18310: PGA1_c18310 - hypothetical protein, at 1,913,904 to 1,914,461 _c18310 PGA1_c18320: PGA1_c18320 - phage tail protein I, at 1,914,454 to 1,915,056 _c18320 PGA1_c18330: PGA1_c18330 - baseplate assembly protein J, at 1,915,049 to 1,915,948 _c18330 Position (kb) 1913 1914 1915Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1912.993 kb on + strand, within PGA1_c18300at 1912.993 kb on + strand, within PGA1_c18300at 1913.001 kb on - strand, within PGA1_c18300at 1913.110 kb on + strand, within PGA1_c18300at 1913.118 kb on - strand, within PGA1_c18300at 1913.118 kb on - strand, within PGA1_c18300at 1913.136 kb on + strand, within PGA1_c18300at 1913.143 kb on + strand, within PGA1_c18300at 1913.168 kb on + strand, within PGA1_c18300at 1913.176 kb on - strand, within PGA1_c18300at 1913.176 kb on - strand, within PGA1_c18300at 1913.176 kb on - strand, within PGA1_c18300at 1913.176 kb on - strand, within PGA1_c18300at 1913.224 kb on + strand, within PGA1_c18300at 1913.232 kb on - strand, within PGA1_c18300at 1913.280 kb on + strand, within PGA1_c18300at 1913.288 kb on - strand, within PGA1_c18300at 1913.295 kb on + strand, within PGA1_c18300at 1913.303 kb on - strand, within PGA1_c18300at 1913.308 kb on - strand, within PGA1_c18300at 1913.308 kb on - strand, within PGA1_c18300at 1913.336 kb on + strand, within PGA1_c18300at 1913.344 kb on + strand, within PGA1_c18300at 1913.344 kb on - strand, within PGA1_c18300at 1913.370 kb on + strand, within PGA1_c18300at 1913.385 kb on + strand, within PGA1_c18300at 1913.393 kb on - strand, within PGA1_c18300at 1913.404 kb on - strand, within PGA1_c18300at 1913.450 kb on + strand, within PGA1_c18300at 1913.518 kb on - strand, within PGA1_c18300at 1913.518 kb on - strand, within PGA1_c18300at 1913.553 kb on + strand, within PGA1_c18300at 1913.561 kb on - strand, within PGA1_c18300at 1913.627 kb on + strand, within PGA1_c18300at 1913.627 kb on + strand, within PGA1_c18300at 1913.627 kb on + strand, within PGA1_c18300at 1913.642 kb on - strand, within PGA1_c18300at 1913.769 kb on - strand, within PGA1_c18300at 1913.774 kb on - strand, within PGA1_c18300at 1913.786 kb on + strand, within PGA1_c18300at 1913.847 kb on + strandat 1913.847 kb on + strandat 1913.847 kb on + strandat 1913.855 kb on - strandat 1913.855 kb on - strandat 1913.879 kb on + strandat 1913.879 kb on + strandat 1913.879 kb on + strandat 1913.884 kb on + strandat 1913.946 kb on - strandat 1914.010 kb on - strand, within PGA1_c18310at 1914.010 kb on - strand, within PGA1_c18310at 1914.042 kb on + strand, within PGA1_c18310at 1914.235 kb on - strand, within PGA1_c18310at 1914.254 kb on + strand, within PGA1_c18310at 1914.254 kb on + strand, within PGA1_c18310at 1914.254 kb on + strand, within PGA1_c18310at 1914.254 kb on + strand, within PGA1_c18310at 1914.262 kb on - strand, within PGA1_c18310at 1914.262 kb on - strand, within PGA1_c18310at 1914.262 kb on - strand, within PGA1_c18310at 1914.264 kb on + strand, within PGA1_c18310at 1914.264 kb on + strand, within PGA1_c18310at 1914.272 kb on - strand, within PGA1_c18310at 1914.298 kb on + strand, within PGA1_c18310at 1914.391 kb on + strand, within PGA1_c18310at 1914.391 kb on + strand, within PGA1_c18310at 1914.399 kb on - strand, within PGA1_c18310at 1914.409 kb on - strandat 1914.430 kb on - strandat 1914.467 kb on + strandat 1914.475 kb on - strandat 1914.579 kb on + strand, within PGA1_c18320at 1914.587 kb on - strand, within PGA1_c18320at 1914.605 kb on + strand, within PGA1_c18320at 1914.615 kb on + strand, within PGA1_c18320at 1914.623 kb on - strand, within PGA1_c18320at 1914.623 kb on - strand, within PGA1_c18320at 1914.623 kb on - strand, within PGA1_c18320at 1914.685 kb on + strand, within PGA1_c18320at 1914.691 kb on + strand, within PGA1_c18320at 1914.724 kb on + strand, within PGA1_c18320at 1914.725 kb on - strand, within PGA1_c18320at 1914.725 kb on - strand, within PGA1_c18320at 1914.725 kb on - strand, within PGA1_c18320at 1914.738 kb on + strand, within PGA1_c18320at 1914.770 kb on + strand, within PGA1_c18320at 1914.780 kb on - strand, within PGA1_c18320at 1914.780 kb on - strand, within PGA1_c18320at 1914.809 kb on + strand, within PGA1_c18320at 1914.815 kb on + strand, within PGA1_c18320at 1914.823 kb on - strand, within PGA1_c18320at 1914.829 kb on - strand, within PGA1_c18320at 1914.867 kb on + strand, within PGA1_c18320at 1914.867 kb on + strand, within PGA1_c18320at 1914.875 kb on - strand, within PGA1_c18320at 1914.998 kb on + strandat 1915.023 kb on - strandat 1915.023 kb on - strandat 1915.044 kb on - strandat 1915.046 kb on - strandat 1915.060 kb on - strandat 1915.062 kb on + strandat 1915.071 kb on - strandat 1915.102 kb on + strandat 1915.102 kb on + strandat 1915.166 kb on + strand, within PGA1_c18330at 1915.166 kb on + strand, within PGA1_c18330at 1915.232 kb on + strand, within PGA1_c18330at 1915.240 kb on - strand, within PGA1_c18330at 1915.291 kb on - strand, within PGA1_c18330at 1915.300 kb on - strand, within PGA1_c18330at 1915.316 kb on + strand, within PGA1_c18330at 1915.316 kb on + strand, within PGA1_c18330at 1915.324 kb on - strand, within PGA1_c18330at 1915.324 kb on - strand, within PGA1_c18330at 1915.324 kb on - strand, within PGA1_c18330at 1915.324 kb on - strand, within PGA1_c18330at 1915.324 kb on - strand, within PGA1_c18330at 1915.331 kb on + strand, within PGA1_c18330at 1915.331 kb on + strand, within PGA1_c18330at 1915.429 kb on - strand, within PGA1_c18330

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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1,912,993 + PGA1_c18300 0.21 -0.8
1,912,993 + PGA1_c18300 0.21 +1.2
1,913,001 - PGA1_c18300 0.22 -0.2
1,913,110 + PGA1_c18300 0.31 +1.1
1,913,118 - PGA1_c18300 0.32 -0.5
1,913,118 - PGA1_c18300 0.32 +0.1
1,913,136 + PGA1_c18300 0.34 -1.2
1,913,143 + PGA1_c18300 0.34 -0.8
1,913,168 + PGA1_c18300 0.36 +1.1
1,913,176 - PGA1_c18300 0.37 +0.4
1,913,176 - PGA1_c18300 0.37 +0.8
1,913,176 - PGA1_c18300 0.37 -1.2
1,913,176 - PGA1_c18300 0.37 -2.1
1,913,224 + PGA1_c18300 0.41 +1.0
1,913,232 - PGA1_c18300 0.42 +0.8
1,913,280 + PGA1_c18300 0.46 +2.1
1,913,288 - PGA1_c18300 0.47 -1.2
1,913,295 + PGA1_c18300 0.47 -0.5
1,913,303 - PGA1_c18300 0.48 -2.2
1,913,308 - PGA1_c18300 0.48 +1.5
1,913,308 - PGA1_c18300 0.48 +0.8
1,913,336 + PGA1_c18300 0.51 +0.7
1,913,344 + PGA1_c18300 0.52 +0.8
1,913,344 - PGA1_c18300 0.52 -3.2
1,913,370 + PGA1_c18300 0.54 -1.0
1,913,385 + PGA1_c18300 0.55 -0.6
1,913,393 - PGA1_c18300 0.56 +0.6
1,913,404 - PGA1_c18300 0.57 -1.4
1,913,450 + PGA1_c18300 0.61 -1.8
1,913,518 - PGA1_c18300 0.67 +1.4
1,913,518 - PGA1_c18300 0.67 +0.2
1,913,553 + PGA1_c18300 0.70 +0.2
1,913,561 - PGA1_c18300 0.70 +0.8
1,913,627 + PGA1_c18300 0.76 -3.6
1,913,627 + PGA1_c18300 0.76 +1.4
1,913,627 + PGA1_c18300 0.76 +0.4
1,913,642 - PGA1_c18300 0.77 -1.3
1,913,769 - PGA1_c18300 0.88 +0.4
1,913,774 - PGA1_c18300 0.89 -0.4
1,913,786 + PGA1_c18300 0.90 +0.6
1,913,847 + +0.2
1,913,847 + -0.2
1,913,847 + +0.6
1,913,855 - -1.4
1,913,855 - -0.1
1,913,879 + -0.8
1,913,879 + -1.1
1,913,879 + +0.3
1,913,884 + -0.2
1,913,946 - +0.8
1,914,010 - PGA1_c18310 0.19 +1.0
1,914,010 - PGA1_c18310 0.19 -0.5
1,914,042 + PGA1_c18310 0.25 +0.6
1,914,235 - PGA1_c18310 0.59 -0.7
1,914,254 + PGA1_c18310 0.63 -1.4
1,914,254 + PGA1_c18310 0.63 +1.4
1,914,254 + PGA1_c18310 0.63 +0.2
1,914,254 + PGA1_c18310 0.63 +0.6
1,914,262 - PGA1_c18310 0.64 +1.4
1,914,262 - PGA1_c18310 0.64 +0.9
1,914,262 - PGA1_c18310 0.64 +1.4
1,914,264 + PGA1_c18310 0.65 +0.1
1,914,264 + PGA1_c18310 0.65 +0.5
1,914,272 - PGA1_c18310 0.66 +0.7
1,914,298 + PGA1_c18310 0.71 -1.1
1,914,391 + PGA1_c18310 0.87 +1.6
1,914,391 + PGA1_c18310 0.87 -1.2
1,914,399 - PGA1_c18310 0.89 +0.8
1,914,409 - -0.9
1,914,430 - -1.1
1,914,467 + +0.3
1,914,475 - +0.5
1,914,579 + PGA1_c18320 0.21 +0.6
1,914,587 - PGA1_c18320 0.22 +2.8
1,914,605 + PGA1_c18320 0.25 +2.8
1,914,615 + PGA1_c18320 0.27 -0.9
1,914,623 - PGA1_c18320 0.28 -0.0
1,914,623 - PGA1_c18320 0.28 -0.4
1,914,623 - PGA1_c18320 0.28 -0.5
1,914,685 + PGA1_c18320 0.38 +2.0
1,914,691 + PGA1_c18320 0.39 -0.2
1,914,724 + PGA1_c18320 0.45 +0.1
1,914,725 - PGA1_c18320 0.45 -0.5
1,914,725 - PGA1_c18320 0.45 +0.1
1,914,725 - PGA1_c18320 0.45 +0.5
1,914,738 + PGA1_c18320 0.47 +0.4
1,914,770 + PGA1_c18320 0.52 -0.2
1,914,780 - PGA1_c18320 0.54 +0.1
1,914,780 - PGA1_c18320 0.54 +1.5
1,914,809 + PGA1_c18320 0.59 -1.1
1,914,815 + PGA1_c18320 0.60 +0.5
1,914,823 - PGA1_c18320 0.61 -0.9
1,914,829 - PGA1_c18320 0.62 +0.8
1,914,867 + PGA1_c18320 0.68 +0.6
1,914,867 + PGA1_c18320 0.68 -1.1
1,914,875 - PGA1_c18320 0.70 -0.1
1,914,998 + -0.6
1,915,023 - +0.8
1,915,023 - -3.2
1,915,044 - +0.4
1,915,046 - -1.1
1,915,060 - -0.6
1,915,062 + +0.5
1,915,071 - +1.3
1,915,102 + +0.5
1,915,102 + -0.2
1,915,166 + PGA1_c18330 0.13 +0.3
1,915,166 + PGA1_c18330 0.13 +2.0
1,915,232 + PGA1_c18330 0.20 +1.1
1,915,240 - PGA1_c18330 0.21 -0.2
1,915,291 - PGA1_c18330 0.27 -0.5
1,915,300 - PGA1_c18330 0.28 -0.2
1,915,316 + PGA1_c18330 0.30 +0.3
1,915,316 + PGA1_c18330 0.30 +0.3
1,915,324 - PGA1_c18330 0.31 -1.8
1,915,324 - PGA1_c18330 0.31 -0.1
1,915,324 - PGA1_c18330 0.31 +1.1
1,915,324 - PGA1_c18330 0.31 +0.2
1,915,324 - PGA1_c18330 0.31 +0.1
1,915,331 + PGA1_c18330 0.31 -0.7
1,915,331 + PGA1_c18330 0.31 +1.0
1,915,429 - PGA1_c18330 0.42 +0.4

Or see this region's nucleotide sequence