Experiment: m.b. Ceftazidime 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1347 and HP15_1348 are separated by 199 nucleotides HP15_1348 and HP15_1349 are separated by 44 nucleotides HP15_1349 and HP15_1350 overlap by 4 nucleotides
HP15_1347: HP15_1347 - sulfate/thiosulfate transporter subunit, at 1,414,829 to 1,415,917
_1347
HP15_1348: HP15_1348 - major facilitator family transporter, at 1,416,117 to 1,417,361
_1348
HP15_1349: HP15_1349 - membrane-fusion protein, at 1,417,406 to 1,418,332
_1349
HP15_1350: HP15_1350 - ATP-binding component of a transport system, at 1,418,329 to 1,419,255
_1350
Position (kb)
1416
1417
1418 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1415.191 kb on + strand, within HP15_1347 at 1415.221 kb on + strand, within HP15_1347 at 1415.221 kb on + strand, within HP15_1347 at 1415.229 kb on - strand, within HP15_1347 at 1415.229 kb on - strand, within HP15_1347 at 1415.236 kb on + strand, within HP15_1347 at 1415.244 kb on - strand, within HP15_1347 at 1415.244 kb on - strand, within HP15_1347 at 1415.255 kb on - strand, within HP15_1347 at 1415.259 kb on + strand, within HP15_1347 at 1415.376 kb on + strand, within HP15_1347 at 1415.419 kb on + strand, within HP15_1347 at 1415.423 kb on - strand, within HP15_1347 at 1415.497 kb on + strand, within HP15_1347 at 1415.553 kb on - strand, within HP15_1347 at 1415.553 kb on - strand, within HP15_1347 at 1415.649 kb on - strand, within HP15_1347 at 1415.654 kb on - strand, within HP15_1347 at 1415.667 kb on + strand, within HP15_1347 at 1415.685 kb on - strand, within HP15_1347 at 1415.718 kb on + strand, within HP15_1347 at 1415.733 kb on + strand, within HP15_1347 at 1415.790 kb on - strand, within HP15_1347 at 1416.298 kb on + strand, within HP15_1348 at 1416.306 kb on - strand, within HP15_1348 at 1416.338 kb on - strand, within HP15_1348 at 1416.420 kb on - strand, within HP15_1348 at 1416.425 kb on - strand, within HP15_1348 at 1416.601 kb on + strand, within HP15_1348 at 1416.698 kb on + strand, within HP15_1348 at 1416.701 kb on - strand, within HP15_1348 at 1416.703 kb on + strand, within HP15_1348 at 1416.703 kb on + strand, within HP15_1348 at 1416.703 kb on + strand, within HP15_1348 at 1416.703 kb on + strand, within HP15_1348 at 1416.711 kb on - strand, within HP15_1348 at 1416.711 kb on - strand, within HP15_1348 at 1416.711 kb on - strand, within HP15_1348 at 1416.790 kb on + strand, within HP15_1348 at 1416.795 kb on - strand, within HP15_1348 at 1416.868 kb on - strand, within HP15_1348 at 1416.892 kb on - strand, within HP15_1348 at 1417.089 kb on + strand, within HP15_1348 at 1417.118 kb on + strand, within HP15_1348 at 1417.143 kb on + strand, within HP15_1348 at 1417.143 kb on + strand, within HP15_1348 at 1417.335 kb on + strand at 1417.368 kb on - strand at 1417.404 kb on + strand at 1417.431 kb on - strand at 1417.525 kb on + strand, within HP15_1349 at 1417.609 kb on - strand, within HP15_1349 at 1417.619 kb on + strand, within HP15_1349 at 1417.619 kb on + strand, within HP15_1349 at 1417.620 kb on - strand, within HP15_1349 at 1417.665 kb on + strand, within HP15_1349 at 1417.673 kb on - strand, within HP15_1349 at 1417.726 kb on + strand, within HP15_1349 at 1417.793 kb on + strand, within HP15_1349 at 1417.955 kb on + strand, within HP15_1349 at 1417.964 kb on + strand, within HP15_1349 at 1418.154 kb on + strand, within HP15_1349 at 1418.162 kb on - strand, within HP15_1349 at 1418.208 kb on - strand, within HP15_1349 at 1418.340 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.008 mg/ml remove 1,415,191 + HP15_1347 0.33 +0.1 1,415,221 + HP15_1347 0.36 -0.7 1,415,221 + HP15_1347 0.36 +3.9 1,415,229 - HP15_1347 0.37 -0.4 1,415,229 - HP15_1347 0.37 -1.1 1,415,236 + HP15_1347 0.37 -0.7 1,415,244 - HP15_1347 0.38 +1.3 1,415,244 - HP15_1347 0.38 +0.1 1,415,255 - HP15_1347 0.39 -0.0 1,415,259 + HP15_1347 0.39 +0.7 1,415,376 + HP15_1347 0.50 -0.3 1,415,419 + HP15_1347 0.54 +0.2 1,415,423 - HP15_1347 0.55 +0.6 1,415,497 + HP15_1347 0.61 +0.3 1,415,553 - HP15_1347 0.66 +0.2 1,415,553 - HP15_1347 0.66 -0.5 1,415,649 - HP15_1347 0.75 +0.3 1,415,654 - HP15_1347 0.76 -0.9 1,415,667 + HP15_1347 0.77 +0.3 1,415,685 - HP15_1347 0.79 +0.5 1,415,718 + HP15_1347 0.82 -0.3 1,415,733 + HP15_1347 0.83 -0.4 1,415,790 - HP15_1347 0.88 +1.5 1,416,298 + HP15_1348 0.15 +0.1 1,416,306 - HP15_1348 0.15 -0.2 1,416,338 - HP15_1348 0.18 +0.7 1,416,420 - HP15_1348 0.24 +0.1 1,416,425 - HP15_1348 0.25 +0.3 1,416,601 + HP15_1348 0.39 +2.9 1,416,698 + HP15_1348 0.47 +0.3 1,416,701 - HP15_1348 0.47 +0.2 1,416,703 + HP15_1348 0.47 -0.9 1,416,703 + HP15_1348 0.47 +0.3 1,416,703 + HP15_1348 0.47 +0.8 1,416,703 + HP15_1348 0.47 +2.7 1,416,711 - HP15_1348 0.48 +0.8 1,416,711 - HP15_1348 0.48 +0.5 1,416,711 - HP15_1348 0.48 -0.8 1,416,790 + HP15_1348 0.54 +0.1 1,416,795 - HP15_1348 0.54 +0.0 1,416,868 - HP15_1348 0.60 +1.8 1,416,892 - HP15_1348 0.62 -0.1 1,417,089 + HP15_1348 0.78 -0.9 1,417,118 + HP15_1348 0.80 +0.2 1,417,143 + HP15_1348 0.82 +0.6 1,417,143 + HP15_1348 0.82 -0.2 1,417,335 + -0.6 1,417,368 - -0.1 1,417,404 + +0.4 1,417,431 - -0.8 1,417,525 + HP15_1349 0.13 -0.7 1,417,609 - HP15_1349 0.22 -0.1 1,417,619 + HP15_1349 0.23 +1.0 1,417,619 + HP15_1349 0.23 +0.7 1,417,620 - HP15_1349 0.23 +1.0 1,417,665 + HP15_1349 0.28 +2.9 1,417,673 - HP15_1349 0.29 -0.2 1,417,726 + HP15_1349 0.35 -0.9 1,417,793 + HP15_1349 0.42 +0.4 1,417,955 + HP15_1349 0.59 +0.7 1,417,964 + HP15_1349 0.60 -0.7 1,418,154 + HP15_1349 0.81 +0.3 1,418,162 - HP15_1349 0.82 -0.1 1,418,208 - HP15_1349 0.87 +0.3 1,418,340 + +0.7
Or see this region's nucleotide sequence