Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13790

Experiment: m.b. Furfuryl Alcohol 0.064 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13780 and PGA1_c13790 overlap by 4 nucleotidesPGA1_c13790 and PGA1_c13800 are separated by 16 nucleotides PGA1_c13780: PGA1_c13780 - D-alanine--poly(phosphoribitol) ligase subunit, at 1,423,445 to 1,425,016 _c13780 PGA1_c13790: PGA1_c13790 - hypothetical protein, at 1,425,013 to 1,426,425 _c13790 PGA1_c13800: PGA1_c13800 - putative alkanesulfonate monooxygenase, at 1,426,442 to 1,427,434 _c13800 Position (kb) 1425 1426 1427Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1424.018 kb on - strand, within PGA1_c13780at 1424.025 kb on + strand, within PGA1_c13780at 1424.025 kb on + strand, within PGA1_c13780at 1424.037 kb on + strand, within PGA1_c13780at 1424.045 kb on - strand, within PGA1_c13780at 1424.045 kb on - strand, within PGA1_c13780at 1424.047 kb on + strand, within PGA1_c13780at 1424.065 kb on - strand, within PGA1_c13780at 1424.096 kb on - strand, within PGA1_c13780at 1424.096 kb on - strand, within PGA1_c13780at 1424.096 kb on - strand, within PGA1_c13780at 1424.122 kb on - strand, within PGA1_c13780at 1424.124 kb on + strand, within PGA1_c13780at 1424.124 kb on + strand, within PGA1_c13780at 1424.137 kb on - strand, within PGA1_c13780at 1424.147 kb on - strand, within PGA1_c13780at 1424.168 kb on - strand, within PGA1_c13780at 1424.179 kb on + strand, within PGA1_c13780at 1424.184 kb on + strand, within PGA1_c13780at 1424.197 kb on - strand, within PGA1_c13780at 1424.266 kb on + strand, within PGA1_c13780at 1424.284 kb on - strand, within PGA1_c13780at 1424.284 kb on - strand, within PGA1_c13780at 1424.304 kb on - strand, within PGA1_c13780at 1424.304 kb on - strand, within PGA1_c13780at 1424.313 kb on + strand, within PGA1_c13780at 1424.313 kb on + strand, within PGA1_c13780at 1424.313 kb on + strand, within PGA1_c13780at 1424.318 kb on + strand, within PGA1_c13780at 1424.321 kb on - strand, within PGA1_c13780at 1424.337 kb on - strand, within PGA1_c13780at 1424.344 kb on - strand, within PGA1_c13780at 1424.453 kb on - strand, within PGA1_c13780at 1424.479 kb on + strand, within PGA1_c13780at 1424.479 kb on + strand, within PGA1_c13780at 1424.479 kb on + strand, within PGA1_c13780at 1424.490 kb on + strand, within PGA1_c13780at 1424.498 kb on - strand, within PGA1_c13780at 1424.530 kb on + strand, within PGA1_c13780at 1424.535 kb on + strand, within PGA1_c13780at 1424.540 kb on + strand, within PGA1_c13780at 1424.587 kb on - strand, within PGA1_c13780at 1424.609 kb on + strand, within PGA1_c13780at 1424.641 kb on + strand, within PGA1_c13780at 1424.641 kb on + strand, within PGA1_c13780at 1424.703 kb on - strand, within PGA1_c13780at 1424.706 kb on - strand, within PGA1_c13780at 1424.710 kb on + strand, within PGA1_c13780at 1424.710 kb on + strand, within PGA1_c13780at 1424.713 kb on - strand, within PGA1_c13780at 1424.713 kb on - strand, within PGA1_c13780at 1424.718 kb on - strand, within PGA1_c13780at 1424.729 kb on + strand, within PGA1_c13780at 1424.762 kb on + strand, within PGA1_c13780at 1424.785 kb on + strand, within PGA1_c13780at 1424.804 kb on - strand, within PGA1_c13780at 1424.913 kb on + strandat 1424.921 kb on - strandat 1424.921 kb on - strandat 1424.931 kb on - strandat 1424.990 kb on + strandat 1425.028 kb on + strandat 1425.050 kb on - strandat 1425.060 kb on - strandat 1425.072 kb on - strandat 1425.155 kb on + strand, within PGA1_c13790at 1425.164 kb on + strand, within PGA1_c13790at 1425.172 kb on - strand, within PGA1_c13790at 1425.182 kb on + strand, within PGA1_c13790at 1425.182 kb on - strand, within PGA1_c13790at 1425.213 kb on + strand, within PGA1_c13790at 1425.223 kb on + strand, within PGA1_c13790at 1425.317 kb on + strand, within PGA1_c13790at 1425.335 kb on + strand, within PGA1_c13790at 1425.396 kb on + strand, within PGA1_c13790at 1425.441 kb on + strand, within PGA1_c13790at 1425.510 kb on - strand, within PGA1_c13790at 1425.568 kb on - strand, within PGA1_c13790at 1425.568 kb on - strand, within PGA1_c13790at 1425.573 kb on - strand, within PGA1_c13790at 1425.626 kb on + strand, within PGA1_c13790at 1425.634 kb on - strand, within PGA1_c13790at 1425.652 kb on - strand, within PGA1_c13790at 1425.666 kb on + strand, within PGA1_c13790at 1425.741 kb on - strand, within PGA1_c13790at 1425.741 kb on - strand, within PGA1_c13790at 1425.753 kb on - strand, within PGA1_c13790at 1425.883 kb on - strand, within PGA1_c13790at 1425.919 kb on - strand, within PGA1_c13790at 1425.919 kb on - strand, within PGA1_c13790at 1425.922 kb on - strand, within PGA1_c13790at 1425.929 kb on + strand, within PGA1_c13790at 1425.937 kb on - strand, within PGA1_c13790at 1425.942 kb on - strand, within PGA1_c13790at 1425.992 kb on + strand, within PGA1_c13790at 1425.992 kb on + strand, within PGA1_c13790at 1426.000 kb on - strand, within PGA1_c13790at 1426.000 kb on - strand, within PGA1_c13790at 1426.000 kb on - strand, within PGA1_c13790at 1426.002 kb on + strand, within PGA1_c13790at 1426.017 kb on - strand, within PGA1_c13790at 1426.017 kb on - strand, within PGA1_c13790at 1426.058 kb on + strand, within PGA1_c13790at 1426.120 kb on + strand, within PGA1_c13790at 1426.123 kb on - strand, within PGA1_c13790at 1426.125 kb on + strand, within PGA1_c13790at 1426.130 kb on + strand, within PGA1_c13790at 1426.185 kb on - strand, within PGA1_c13790at 1426.233 kb on - strand, within PGA1_c13790at 1426.294 kb on + strandat 1426.311 kb on - strandat 1426.319 kb on - strandat 1426.319 kb on - strandat 1426.357 kb on + strandat 1426.399 kb on + strandat 1426.407 kb on + strandat 1426.407 kb on - strandat 1426.468 kb on - strandat 1426.468 kb on - strandat 1426.468 kb on - strandat 1426.472 kb on + strandat 1426.475 kb on - strandat 1426.477 kb on + strandat 1426.477 kb on + strandat 1426.482 kb on + strandat 1426.490 kb on - strandat 1426.563 kb on - strand, within PGA1_c13800at 1426.590 kb on + strand, within PGA1_c13800at 1426.600 kb on + strand, within PGA1_c13800at 1426.600 kb on + strand, within PGA1_c13800at 1426.615 kb on - strand, within PGA1_c13800at 1426.660 kb on - strand, within PGA1_c13800at 1426.663 kb on + strand, within PGA1_c13800at 1426.664 kb on - strand, within PGA1_c13800at 1426.887 kb on - strand, within PGA1_c13800at 1426.923 kb on + strand, within PGA1_c13800at 1426.986 kb on - strand, within PGA1_c13800at 1426.991 kb on + strand, within PGA1_c13800at 1426.991 kb on + strand, within PGA1_c13800at 1427.001 kb on + strand, within PGA1_c13800at 1427.009 kb on - strand, within PGA1_c13800at 1427.009 kb on - strand, within PGA1_c13800at 1427.009 kb on - strand, within PGA1_c13800at 1427.042 kb on + strand, within PGA1_c13800at 1427.102 kb on + strand, within PGA1_c13800at 1427.119 kb on + strand, within PGA1_c13800at 1427.127 kb on - strand, within PGA1_c13800at 1427.159 kb on + strand, within PGA1_c13800at 1427.159 kb on + strand, within PGA1_c13800at 1427.159 kb on + strand, within PGA1_c13800at 1427.159 kb on + strand, within PGA1_c13800at 1427.159 kb on + strand, within PGA1_c13800at 1427.159 kb on + strand, within PGA1_c13800at 1427.167 kb on - strand, within PGA1_c13800at 1427.192 kb on - strand, within PGA1_c13800at 1427.194 kb on + strand, within PGA1_c13800at 1427.194 kb on + strand, within PGA1_c13800at 1427.194 kb on + strand, within PGA1_c13800at 1427.194 kb on + strand, within PGA1_c13800at 1427.194 kb on + strand, within PGA1_c13800at 1427.202 kb on - strand, within PGA1_c13800at 1427.202 kb on - strand, within PGA1_c13800at 1427.263 kb on + strand, within PGA1_c13800at 1427.271 kb on + strand, within PGA1_c13800at 1427.271 kb on - strand, within PGA1_c13800at 1427.295 kb on + strand, within PGA1_c13800at 1427.303 kb on - strand, within PGA1_c13800at 1427.303 kb on - strand, within PGA1_c13800at 1427.357 kb on - strandat 1427.363 kb on - strandat 1427.363 kb on - strandat 1427.376 kb on + strandat 1427.386 kb on + strandat 1427.386 kb on + strandat 1427.389 kb on - strandat 1427.394 kb on - strandat 1427.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Furfuryl Alcohol 0.064 vol%
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1,424,018 - PGA1_c13780 0.36 -0.6
1,424,025 + PGA1_c13780 0.37 -2.2
1,424,025 + PGA1_c13780 0.37 +0.6
1,424,037 + PGA1_c13780 0.38 +0.1
1,424,045 - PGA1_c13780 0.38 +0.1
1,424,045 - PGA1_c13780 0.38 -0.4
1,424,047 + PGA1_c13780 0.38 -1.6
1,424,065 - PGA1_c13780 0.39 -1.3
1,424,096 - PGA1_c13780 0.41 +1.0
1,424,096 - PGA1_c13780 0.41 +1.1
1,424,096 - PGA1_c13780 0.41 -1.2
1,424,122 - PGA1_c13780 0.43 -0.4
1,424,124 + PGA1_c13780 0.43 -0.8
1,424,124 + PGA1_c13780 0.43 -0.9
1,424,137 - PGA1_c13780 0.44 -0.5
1,424,147 - PGA1_c13780 0.45 +0.6
1,424,168 - PGA1_c13780 0.46 -1.5
1,424,179 + PGA1_c13780 0.47 +0.2
1,424,184 + PGA1_c13780 0.47 -0.7
1,424,197 - PGA1_c13780 0.48 +0.4
1,424,266 + PGA1_c13780 0.52 -0.2
1,424,284 - PGA1_c13780 0.53 -1.7
1,424,284 - PGA1_c13780 0.53 +0.3
1,424,304 - PGA1_c13780 0.55 +0.2
1,424,304 - PGA1_c13780 0.55 +0.5
1,424,313 + PGA1_c13780 0.55 -0.2
1,424,313 + PGA1_c13780 0.55 +0.3
1,424,313 + PGA1_c13780 0.55 +0.2
1,424,318 + PGA1_c13780 0.56 -0.8
1,424,321 - PGA1_c13780 0.56 +0.5
1,424,337 - PGA1_c13780 0.57 +1.1
1,424,344 - PGA1_c13780 0.57 +0.3
1,424,453 - PGA1_c13780 0.64 -1.9
1,424,479 + PGA1_c13780 0.66 -1.8
1,424,479 + PGA1_c13780 0.66 +1.4
1,424,479 + PGA1_c13780 0.66 -0.8
1,424,490 + PGA1_c13780 0.66 +0.8
1,424,498 - PGA1_c13780 0.67 +0.2
1,424,530 + PGA1_c13780 0.69 -0.4
1,424,535 + PGA1_c13780 0.69 +1.4
1,424,540 + PGA1_c13780 0.70 +0.8
1,424,587 - PGA1_c13780 0.73 -2.1
1,424,609 + PGA1_c13780 0.74 -0.4
1,424,641 + PGA1_c13780 0.76 -0.4
1,424,641 + PGA1_c13780 0.76 +0.4
1,424,703 - PGA1_c13780 0.80 -0.9
1,424,706 - PGA1_c13780 0.80 +0.0
1,424,710 + PGA1_c13780 0.80 -0.0
1,424,710 + PGA1_c13780 0.80 -1.5
1,424,713 - PGA1_c13780 0.81 -0.9
1,424,713 - PGA1_c13780 0.81 -1.0
1,424,718 - PGA1_c13780 0.81 +0.3
1,424,729 + PGA1_c13780 0.82 +0.4
1,424,762 + PGA1_c13780 0.84 -0.2
1,424,785 + PGA1_c13780 0.85 +1.6
1,424,804 - PGA1_c13780 0.86 -0.2
1,424,913 + -2.4
1,424,921 - -0.2
1,424,921 - +0.6
1,424,931 - -0.1
1,424,990 + -0.8
1,425,028 + -1.7
1,425,050 - -0.9
1,425,060 - +0.4
1,425,072 - -1.4
1,425,155 + PGA1_c13790 0.10 +0.3
1,425,164 + PGA1_c13790 0.11 +0.2
1,425,172 - PGA1_c13790 0.11 +0.3
1,425,182 + PGA1_c13790 0.12 -0.1
1,425,182 - PGA1_c13790 0.12 +1.2
1,425,213 + PGA1_c13790 0.14 +1.5
1,425,223 + PGA1_c13790 0.15 -0.8
1,425,317 + PGA1_c13790 0.22 +1.2
1,425,335 + PGA1_c13790 0.23 -0.8
1,425,396 + PGA1_c13790 0.27 +0.6
1,425,441 + PGA1_c13790 0.30 -0.3
1,425,510 - PGA1_c13790 0.35 -0.1
1,425,568 - PGA1_c13790 0.39 +0.4
1,425,568 - PGA1_c13790 0.39 -0.1
1,425,573 - PGA1_c13790 0.40 -1.2
1,425,626 + PGA1_c13790 0.43 -0.1
1,425,634 - PGA1_c13790 0.44 +0.2
1,425,652 - PGA1_c13790 0.45 -0.0
1,425,666 + PGA1_c13790 0.46 -0.6
1,425,741 - PGA1_c13790 0.52 -0.2
1,425,741 - PGA1_c13790 0.52 +0.9
1,425,753 - PGA1_c13790 0.52 +0.9
1,425,883 - PGA1_c13790 0.62 -0.4
1,425,919 - PGA1_c13790 0.64 +0.5
1,425,919 - PGA1_c13790 0.64 -0.7
1,425,922 - PGA1_c13790 0.64 -0.3
1,425,929 + PGA1_c13790 0.65 +0.4
1,425,937 - PGA1_c13790 0.65 -1.3
1,425,942 - PGA1_c13790 0.66 -0.1
1,425,992 + PGA1_c13790 0.69 +1.0
1,425,992 + PGA1_c13790 0.69 +0.5
1,426,000 - PGA1_c13790 0.70 -1.1
1,426,000 - PGA1_c13790 0.70 -0.7
1,426,000 - PGA1_c13790 0.70 +1.5
1,426,002 + PGA1_c13790 0.70 +0.3
1,426,017 - PGA1_c13790 0.71 +0.8
1,426,017 - PGA1_c13790 0.71 +0.9
1,426,058 + PGA1_c13790 0.74 +1.1
1,426,120 + PGA1_c13790 0.78 +0.2
1,426,123 - PGA1_c13790 0.79 +0.5
1,426,125 + PGA1_c13790 0.79 +1.0
1,426,130 + PGA1_c13790 0.79 +0.8
1,426,185 - PGA1_c13790 0.83 +0.8
1,426,233 - PGA1_c13790 0.86 +0.8
1,426,294 + +0.3
1,426,311 - +1.5
1,426,319 - -0.7
1,426,319 - +0.1
1,426,357 + +1.9
1,426,399 + +0.6
1,426,407 + -0.4
1,426,407 - -0.0
1,426,468 - -0.5
1,426,468 - -0.5
1,426,468 - +0.5
1,426,472 + -3.4
1,426,475 - +0.8
1,426,477 + -0.9
1,426,477 + +0.8
1,426,482 + +0.1
1,426,490 - +0.1
1,426,563 - PGA1_c13800 0.12 -1.8
1,426,590 + PGA1_c13800 0.15 -0.1
1,426,600 + PGA1_c13800 0.16 -0.2
1,426,600 + PGA1_c13800 0.16 +0.4
1,426,615 - PGA1_c13800 0.17 -0.4
1,426,660 - PGA1_c13800 0.22 +0.3
1,426,663 + PGA1_c13800 0.22 -0.7
1,426,664 - PGA1_c13800 0.22 +1.0
1,426,887 - PGA1_c13800 0.45 +1.4
1,426,923 + PGA1_c13800 0.48 +0.6
1,426,986 - PGA1_c13800 0.55 -0.6
1,426,991 + PGA1_c13800 0.55 +0.2
1,426,991 + PGA1_c13800 0.55 +0.3
1,427,001 + PGA1_c13800 0.56 +2.0
1,427,009 - PGA1_c13800 0.57 +2.0
1,427,009 - PGA1_c13800 0.57 -1.0
1,427,009 - PGA1_c13800 0.57 +0.2
1,427,042 + PGA1_c13800 0.60 +0.3
1,427,102 + PGA1_c13800 0.66 +0.2
1,427,119 + PGA1_c13800 0.68 +1.1
1,427,127 - PGA1_c13800 0.69 +0.1
1,427,159 + PGA1_c13800 0.72 -1.5
1,427,159 + PGA1_c13800 0.72 +0.7
1,427,159 + PGA1_c13800 0.72 +0.5
1,427,159 + PGA1_c13800 0.72 -0.8
1,427,159 + PGA1_c13800 0.72 -0.1
1,427,159 + PGA1_c13800 0.72 +0.4
1,427,167 - PGA1_c13800 0.73 -1.2
1,427,192 - PGA1_c13800 0.76 +0.1
1,427,194 + PGA1_c13800 0.76 +0.1
1,427,194 + PGA1_c13800 0.76 -0.4
1,427,194 + PGA1_c13800 0.76 -0.9
1,427,194 + PGA1_c13800 0.76 -0.3
1,427,194 + PGA1_c13800 0.76 -0.3
1,427,202 - PGA1_c13800 0.77 +0.2
1,427,202 - PGA1_c13800 0.77 -0.3
1,427,263 + PGA1_c13800 0.83 -0.6
1,427,271 + PGA1_c13800 0.83 +1.8
1,427,271 - PGA1_c13800 0.83 -0.5
1,427,295 + PGA1_c13800 0.86 -1.0
1,427,303 - PGA1_c13800 0.87 -2.0
1,427,303 - PGA1_c13800 0.87 +0.5
1,427,357 - +0.8
1,427,363 - +0.1
1,427,363 - +1.5
1,427,376 + +1.0
1,427,386 + -0.2
1,427,386 + -0.2
1,427,389 - -2.1
1,427,394 - -0.7
1,427,394 - -0.4

Or see this region's nucleotide sequence