Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0588.2 and SO_0590 are separated by 17 nucleotides SO_0590 and SO0588.4 are separated by 7 nucleotides SO0588.4 and SO0591 are separated by 72 nucleotides
SO0588.2: SO0588.2 - hypothetical permease of the drug/metabolite transporter (DMT) superfamily (NCBI ptt file), at 616,840 to 617,277
SO0588.2
SO_0590: SO_0590 - no description, at 617,295 to 618,032
_0590
SO0588.4: SO0588.4 - hypothetical phosphatidylserine decarboxylase (NCBI ptt file), at 618,040 to 618,174
SO0588.4
SO0591: SO0591 - conserved hypothetical protein TIGR00157 (NCBI ptt file), at 618,247 to 619,311
SO0591
Position (kb) 618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 617.042 kb on + strand, within SO0588.2 at 617.052 kb on + strand, within SO0588.2 at 617.052 kb on + strand, within SO0588.2 at 617.133 kb on + strand, within SO0588.2 at 617.148 kb on + strand, within SO0588.2 at 617.161 kb on - strand, within SO0588.2 at 617.208 kb on - strand, within SO0588.2 at 617.229 kb on - strand, within SO0588.2 at 618.286 kb on - strand at 618.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 617,042 + SO0588.2 0.46 +2.4 617,052 + SO0588.2 0.48 +1.4 617,052 + SO0588.2 0.48 -1.3 617,133 + SO0588.2 0.67 +0.4 617,148 + SO0588.2 0.70 +0.2 617,161 - SO0588.2 0.73 +0.7 617,208 - SO0588.2 0.84 +1.6 617,229 - SO0588.2 0.89 -0.8 618,286 - -3.6 618,299 - -3.3
Or see this region's nucleotide sequence