Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0737 and SO0737.1 are separated by 227 nucleotides SO0737.1 and SO_0738 overlap by 1 nucleotides SO_0738 and SO_0739 are separated by 39 nucleotides
SO0737: SO0737 - TonB-dependent receptor, putative (NCBI ptt file), at 751,569 to 753,647
SO0737
SO0737.1: SO0737.1 - hypothetical alkaline phosphatase (NCBI ptt file), at 753,875 to 754,522
SO0737.1
SO_0738: SO_0738 - no description, at 754,522 to 755,379
_0738
SO_0739: SO_0739 - no description, at 755,419 to 756,255
_0739
Position (kb) 753
754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 752.876 kb on + strand, within SO0737 at 752.877 kb on + strand, within SO0737 at 752.999 kb on + strand, within SO0737 at 753.112 kb on + strand, within SO0737 at 753.124 kb on + strand, within SO0737 at 753.157 kb on + strand, within SO0737 at 753.182 kb on + strand, within SO0737 at 753.257 kb on - strand, within SO0737 at 753.373 kb on + strand, within SO0737 at 753.422 kb on + strand, within SO0737 at 753.430 kb on - strand, within SO0737 at 753.430 kb on - strand, within SO0737 at 753.430 kb on - strand, within SO0737 at 753.451 kb on + strand at 753.451 kb on + strand at 753.459 kb on - strand at 753.470 kb on + strand at 753.601 kb on + strand at 753.620 kb on - strand at 753.649 kb on + strand at 753.702 kb on - strand at 753.940 kb on - strand, within SO0737.1 at 753.953 kb on - strand, within SO0737.1 at 753.958 kb on - strand, within SO0737.1 at 753.958 kb on - strand, within SO0737.1 at 753.988 kb on + strand, within SO0737.1 at 753.989 kb on - strand, within SO0737.1 at 754.125 kb on - strand, within SO0737.1 at 754.194 kb on - strand, within SO0737.1 at 754.210 kb on + strand, within SO0737.1 at 754.214 kb on + strand, within SO0737.1 at 754.223 kb on - strand, within SO0737.1 at 754.248 kb on + strand, within SO0737.1 at 754.248 kb on + strand, within SO0737.1 at 754.255 kb on + strand, within SO0737.1 at 754.268 kb on + strand, within SO0737.1 at 754.468 kb on - strand at 754.528 kb on + strand at 754.564 kb on + strand at 754.610 kb on + strand, within SO_0738 at 754.613 kb on - strand, within SO_0738 at 754.628 kb on - strand, within SO_0738 at 754.628 kb on - strand, within SO_0738 at 754.743 kb on + strand, within SO_0738 at 754.743 kb on + strand, within SO_0738 at 754.751 kb on - strand, within SO_0738 at 754.751 kb on - strand, within SO_0738 at 755.009 kb on + strand, within SO_0738 at 755.014 kb on + strand, within SO_0738 at 755.014 kb on + strand, within SO_0738 at 755.021 kb on + strand, within SO_0738 at 755.022 kb on - strand, within SO_0738 at 755.084 kb on + strand, within SO_0738 at 755.121 kb on + strand, within SO_0738 at 755.121 kb on + strand, within SO_0738 at 755.121 kb on + strand, within SO_0738 at 755.121 kb on + strand, within SO_0738 at 755.121 kb on + strand, within SO_0738 at 755.129 kb on - strand, within SO_0738 at 755.129 kb on - strand, within SO_0738 at 755.131 kb on + strand, within SO_0738 at 755.136 kb on + strand, within SO_0738 at 755.136 kb on + strand, within SO_0738 at 755.149 kb on - strand, within SO_0738 at 755.188 kb on - strand, within SO_0738 at 755.224 kb on + strand, within SO_0738 at 755.359 kb on - strand at 755.373 kb on + strand at 755.381 kb on - strand at 755.381 kb on - strand at 755.381 kb on - strand at 755.446 kb on + strand at 755.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 752,876 + SO0737 0.63 -0.6 752,877 + SO0737 0.63 -1.2 752,999 + SO0737 0.69 +2.9 753,112 + SO0737 0.74 -1.3 753,124 + SO0737 0.75 -0.5 753,157 + SO0737 0.76 +2.0 753,182 + SO0737 0.78 +1.2 753,257 - SO0737 0.81 -1.1 753,373 + SO0737 0.87 -2.9 753,422 + SO0737 0.89 -0.1 753,430 - SO0737 0.90 -2.8 753,430 - SO0737 0.90 -1.5 753,430 - SO0737 0.90 +1.2 753,451 + +0.9 753,451 + -0.3 753,459 - +1.6 753,470 + -1.4 753,601 + +1.6 753,620 - -0.2 753,649 + -0.1 753,702 - +0.8 753,940 - SO0737.1 0.10 -0.1 753,953 - SO0737.1 0.12 +1.1 753,958 - SO0737.1 0.13 +1.2 753,958 - SO0737.1 0.13 -0.5 753,988 + SO0737.1 0.17 -1.9 753,989 - SO0737.1 0.18 -1.7 754,125 - SO0737.1 0.39 +1.3 754,194 - SO0737.1 0.49 -1.8 754,210 + SO0737.1 0.52 +0.9 754,214 + SO0737.1 0.52 -0.1 754,223 - SO0737.1 0.54 +1.6 754,248 + SO0737.1 0.58 -2.3 754,248 + SO0737.1 0.58 +1.4 754,255 + SO0737.1 0.59 +1.3 754,268 + SO0737.1 0.61 -1.0 754,468 - +1.4 754,528 + +0.3 754,564 + +0.4 754,610 + SO_0738 0.10 -0.0 754,613 - SO_0738 0.11 +1.0 754,628 - SO_0738 0.12 +0.6 754,628 - SO_0738 0.12 +1.0 754,743 + SO_0738 0.26 +0.4 754,743 + SO_0738 0.26 +3.2 754,751 - SO_0738 0.27 -1.2 754,751 - SO_0738 0.27 +0.7 755,009 + SO_0738 0.57 +0.5 755,014 + SO_0738 0.57 +1.5 755,014 + SO_0738 0.57 -2.1 755,021 + SO_0738 0.58 +1.9 755,022 - SO_0738 0.58 +0.2 755,084 + SO_0738 0.66 +0.5 755,121 + SO_0738 0.70 +0.3 755,121 + SO_0738 0.70 +1.0 755,121 + SO_0738 0.70 +0.9 755,121 + SO_0738 0.70 +0.9 755,121 + SO_0738 0.70 +0.8 755,129 - SO_0738 0.71 -0.2 755,129 - SO_0738 0.71 -0.4 755,131 + SO_0738 0.71 +0.0 755,136 + SO_0738 0.72 +2.2 755,136 + SO_0738 0.72 -1.0 755,149 - SO_0738 0.73 +0.1 755,188 - SO_0738 0.78 +0.7 755,224 + SO_0738 0.82 -0.1 755,359 - -0.4 755,373 + -0.7 755,381 - -1.4 755,381 - -0.7 755,381 - -0.6 755,446 + -0.5 755,483 - +0.6
Or see this region's nucleotide sequence