Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4213

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4212 and Dshi_4213 overlap by 8 nucleotidesDshi_4213 and Dshi_4214 are separated by 506 nucleotides Dshi_4212: Dshi_4212 - ParB domain protein nuclease (RefSeq), at 58,898 to 60,001 _4212 Dshi_4213: Dshi_4213 - Cobyrinic acid ac-diamide synthase (RefSeq), at 59,994 to 61,394 _4213 Dshi_4214: Dshi_4214 - initiator RepB protein (RefSeq), at 61,901 to 63,073 _4214 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1at 60.016 kb on + strandat 60.239 kb on + strand, within Dshi_4213at 60.249 kb on + strand, within Dshi_4213at 60.538 kb on - strand, within Dshi_4213at 60.570 kb on + strand, within Dshi_4213at 60.793 kb on + strand, within Dshi_4213at 60.793 kb on + strand, within Dshi_4213at 60.940 kb on - strand, within Dshi_4213at 60.982 kb on + strand, within Dshi_4213at 61.069 kb on + strand, within Dshi_4213at 61.117 kb on + strand, within Dshi_4213at 61.125 kb on - strand, within Dshi_4213at 61.127 kb on + strand, within Dshi_4213at 61.146 kb on - strand, within Dshi_4213at 61.347 kb on - strandat 61.357 kb on + strandat 61.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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60,016 + +0.7
60,239 + Dshi_4213 0.17 -1.5
60,249 + Dshi_4213 0.18 -0.1
60,538 - Dshi_4213 0.39 -3.6
60,570 + Dshi_4213 0.41 -2.7
60,793 + Dshi_4213 0.57 -0.6
60,793 + Dshi_4213 0.57 -2.2
60,940 - Dshi_4213 0.68 -2.4
60,982 + Dshi_4213 0.71 -0.8
61,069 + Dshi_4213 0.77 +0.5
61,117 + Dshi_4213 0.80 -0.1
61,125 - Dshi_4213 0.81 -2.2
61,127 + Dshi_4213 0.81 -2.5
61,146 - Dshi_4213 0.82 -2.7
61,347 - -2.6
61,357 + -2.6
61,900 - -0.5

Or see this region's nucleotide sequence