Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2837

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2836 and Dshi_2837 are separated by 505 nucleotidesDshi_2837 and Dshi_2838 are separated by 79 nucleotidesDshi_2838 and Dshi_2839 are separated by 89 nucleotides Dshi_2836: Dshi_2836 - tryptophanyl-tRNA synthetase (RefSeq), at 2,994,331 to 2,995,356 _2836 Dshi_2837: Dshi_2837 - aminotransferase class IV (RefSeq), at 2,995,862 to 2,996,722 _2837 Dshi_2838: Dshi_2838 - UspA domain protein (RefSeq), at 2,996,802 to 2,997,257 _2838 Dshi_2839: Dshi_2839 - Scaffold protein Nfu/NifU (RefSeq), at 2,997,347 to 2,997,910 _2839 Position (kb) 2995 2996 2997Strain fitness (log2 ratio) -1 0 1at 2995.483 kb on + strandat 2995.634 kb on - strandat 2995.965 kb on - strand, within Dshi_2837at 2996.135 kb on + strand, within Dshi_2837at 2996.269 kb on - strand, within Dshi_2837at 2996.438 kb on - strand, within Dshi_2837at 2996.551 kb on + strand, within Dshi_2837at 2996.551 kb on + strand, within Dshi_2837at 2996.851 kb on - strand, within Dshi_2838at 2996.920 kb on - strand, within Dshi_2838at 2996.952 kb on - strand, within Dshi_2838at 2997.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,995,483 + -0.6
2,995,634 - -0.2
2,995,965 - Dshi_2837 0.12 +1.1
2,996,135 + Dshi_2837 0.32 +1.7
2,996,269 - Dshi_2837 0.47 +0.4
2,996,438 - Dshi_2837 0.67 -0.0
2,996,551 + Dshi_2837 0.80 -0.8
2,996,551 + Dshi_2837 0.80 +0.8
2,996,851 - Dshi_2838 0.11 -0.3
2,996,920 - Dshi_2838 0.26 -1.4
2,996,952 - Dshi_2838 0.33 +0.1
2,997,275 - +0.2

Or see this region's nucleotide sequence