Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2646

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2644 and Dshi_2645 are separated by 3 nucleotidesDshi_2645 and Dshi_2646 are separated by 31 nucleotidesDshi_2646 and Dshi_2647 are separated by 283 nucleotides Dshi_2644: Dshi_2644 - export-related chaperone CsaA (RefSeq), at 2,801,317 to 2,801,655 _2644 Dshi_2645: Dshi_2645 - pyrroline-5-carboxylate reductase (RefSeq), at 2,801,659 to 2,802,480 _2645 Dshi_2646: Dshi_2646 - Protein of unknown function DUF1790 (RefSeq), at 2,802,512 to 2,803,042 _2646 Dshi_2647: Dshi_2647 - hypothetical protein (RefSeq), at 2,803,326 to 2,804,246 _2647 Position (kb) 2802 2803 2804Strain fitness (log2 ratio) -2 -1 0 1at 2801.598 kb on - strand, within Dshi_2644at 2802.529 kb on + strandat 2802.597 kb on + strand, within Dshi_2646at 2802.597 kb on + strand, within Dshi_2646at 2802.605 kb on - strand, within Dshi_2646at 2802.605 kb on - strand, within Dshi_2646at 2802.657 kb on - strand, within Dshi_2646at 2802.657 kb on - strand, within Dshi_2646at 2802.657 kb on - strand, within Dshi_2646at 2802.738 kb on + strand, within Dshi_2646at 2802.769 kb on - strand, within Dshi_2646at 2802.896 kb on - strand, within Dshi_2646at 2803.038 kb on + strandat 2803.046 kb on - strandat 2803.046 kb on - strandat 2803.080 kb on - strandat 2803.116 kb on - strandat 2803.133 kb on - strandat 2803.218 kb on + strandat 2803.277 kb on - strandat 2803.324 kb on + strandat 2803.332 kb on - strandat 2803.360 kb on - strandat 2803.381 kb on + strandat 2803.431 kb on - strand, within Dshi_2647at 2803.466 kb on + strand, within Dshi_2647at 2803.547 kb on + strand, within Dshi_2647at 2803.853 kb on - strand, within Dshi_2647at 2803.927 kb on - strand, within Dshi_2647at 2804.039 kb on - strand, within Dshi_2647

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,801,598 - Dshi_2644 0.83 +0.2
2,802,529 + -0.3
2,802,597 + Dshi_2646 0.16 -0.2
2,802,597 + Dshi_2646 0.16 -0.3
2,802,605 - Dshi_2646 0.18 -1.7
2,802,605 - Dshi_2646 0.18 -1.4
2,802,657 - Dshi_2646 0.27 -2.1
2,802,657 - Dshi_2646 0.27 -0.6
2,802,657 - Dshi_2646 0.27 -0.2
2,802,738 + Dshi_2646 0.43 -1.5
2,802,769 - Dshi_2646 0.48 -0.5
2,802,896 - Dshi_2646 0.72 -0.5
2,803,038 + -0.5
2,803,046 - -1.1
2,803,046 - +0.3
2,803,080 - -0.6
2,803,116 - -0.2
2,803,133 - -0.2
2,803,218 + +0.4
2,803,277 - -0.0
2,803,324 + -0.4
2,803,332 - -2.7
2,803,360 - -0.1
2,803,381 + -0.3
2,803,431 - Dshi_2647 0.11 -0.6
2,803,466 + Dshi_2647 0.15 -0.5
2,803,547 + Dshi_2647 0.24 -1.9
2,803,853 - Dshi_2647 0.57 -0.2
2,803,927 - Dshi_2647 0.65 +0.9
2,804,039 - Dshi_2647 0.77 -0.8

Or see this region's nucleotide sequence