Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2641

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2640 and Dshi_2641 are separated by 113 nucleotidesDshi_2641 and Dshi_2642 overlap by 4 nucleotidesDshi_2642 and Dshi_2643 are separated by 82 nucleotides Dshi_2640: Dshi_2640 - hypothetical protein (RefSeq), at 2,797,947 to 2,798,738 _2640 Dshi_2641: Dshi_2641 - Thymidine kinase (RefSeq), at 2,798,852 to 2,799,451 _2641 Dshi_2642: Dshi_2642 - hypothetical protein (RefSeq), at 2,799,448 to 2,800,284 _2642 Dshi_2643: Dshi_2643 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 2,800,367 to 2,801,317 _2643 Position (kb) 2798 2799 2800Strain fitness (log2 ratio) -2 -1 0 1at 2797.868 kb on - strandat 2797.868 kb on - strandat 2798.093 kb on + strand, within Dshi_2640at 2798.182 kb on - strand, within Dshi_2640at 2798.558 kb on + strand, within Dshi_2640at 2798.571 kb on - strand, within Dshi_2640at 2798.677 kb on + strandat 2798.677 kb on + strandat 2798.685 kb on - strandat 2798.687 kb on + strandat 2799.085 kb on + strand, within Dshi_2641at 2799.192 kb on - strand, within Dshi_2641at 2799.367 kb on + strand, within Dshi_2641at 2799.446 kb on + strandat 2799.454 kb on - strandat 2799.811 kb on + strand, within Dshi_2642at 2800.035 kb on + strand, within Dshi_2642at 2800.269 kb on + strandat 2800.311 kb on + strandat 2800.374 kb on + strandat 2800.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,797,868 - +0.3
2,797,868 - +0.5
2,798,093 + Dshi_2640 0.18 -2.4
2,798,182 - Dshi_2640 0.30 +0.8
2,798,558 + Dshi_2640 0.77 -0.2
2,798,571 - Dshi_2640 0.79 -0.7
2,798,677 + -0.3
2,798,677 + -0.2
2,798,685 - -0.4
2,798,687 + +0.6
2,799,085 + Dshi_2641 0.39 -0.3
2,799,192 - Dshi_2641 0.57 -0.5
2,799,367 + Dshi_2641 0.86 -0.8
2,799,446 + +0.4
2,799,454 - +0.2
2,799,811 + Dshi_2642 0.43 -0.8
2,800,035 + Dshi_2642 0.70 -0.6
2,800,269 + +1.1
2,800,311 + -0.8
2,800,374 + +0.2
2,800,430 + -0.3

Or see this region's nucleotide sequence