Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2378 and Dshi_2379 overlap by 4 nucleotides Dshi_2379 and Dshi_2380 overlap by 4 nucleotides Dshi_2380 and Dshi_R0044 are separated by 88 nucleotides Dshi_R0044 and Dshi_2381 are separated by 190 nucleotides
Dshi_2378: Dshi_2378 - alanine racemase (RefSeq), at 2,512,525 to 2,513,574
_2378
Dshi_2379: Dshi_2379 - protein of unknown function DUF140 (RefSeq), at 2,513,571 to 2,514,347
_2379
Dshi_2380: Dshi_2380 - ABC transporter related (RefSeq), at 2,514,344 to 2,515,117
_2380
Dshi_R0044: Dshi_R0044 - tRNA-Leu (RefSeq), at 2,515,206 to 2,515,292
_R0044
Dshi_2381: Dshi_2381 - lipoate-protein ligase B (RefSeq), at 2,515,483 to 2,516,145
_2381
Position (kb)
2514
2515
2516 Strain fitness (log2 ratio)
-2
-1
0
1 at 2513.365 kb on + strand, within Dshi_2378 at 2513.662 kb on + strand, within Dshi_2379 at 2513.687 kb on - strand, within Dshi_2379 at 2513.733 kb on - strand, within Dshi_2379 at 2513.871 kb on + strand, within Dshi_2379 at 2513.913 kb on - strand, within Dshi_2379 at 2514.001 kb on + strand, within Dshi_2379 at 2514.041 kb on + strand, within Dshi_2379 at 2514.233 kb on - strand, within Dshi_2379 at 2514.251 kb on + strand, within Dshi_2379 at 2514.251 kb on + strand, within Dshi_2379 at 2514.251 kb on + strand, within Dshi_2379 at 2514.571 kb on + strand, within Dshi_2380 at 2514.740 kb on + strand, within Dshi_2380 at 2514.784 kb on - strand, within Dshi_2380 at 2514.841 kb on - strand, within Dshi_2380 at 2514.867 kb on + strand, within Dshi_2380 at 2514.907 kb on - strand, within Dshi_2380 at 2515.459 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,513,365 + Dshi_2378 0.80 -2.3 2,513,662 + Dshi_2379 0.12 -0.5 2,513,687 - Dshi_2379 0.15 -1.0 2,513,733 - Dshi_2379 0.21 -0.3 2,513,871 + Dshi_2379 0.39 +0.3 2,513,913 - Dshi_2379 0.44 -0.8 2,514,001 + Dshi_2379 0.55 -0.6 2,514,041 + Dshi_2379 0.60 -1.2 2,514,233 - Dshi_2379 0.85 -0.8 2,514,251 + Dshi_2379 0.88 -0.2 2,514,251 + Dshi_2379 0.88 -1.6 2,514,251 + Dshi_2379 0.88 -0.3 2,514,571 + Dshi_2380 0.29 -0.8 2,514,740 + Dshi_2380 0.51 -0.9 2,514,784 - Dshi_2380 0.57 -0.3 2,514,841 - Dshi_2380 0.64 -0.3 2,514,867 + Dshi_2380 0.68 -0.2 2,514,907 - Dshi_2380 0.73 -0.2 2,515,459 + -0.4
Or see this region's nucleotide sequence