Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2372

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2371 and Dshi_2372 are separated by 139 nucleotidesDshi_2372 and Dshi_2373 are separated by 230 nucleotides Dshi_2371: Dshi_2371 - dihydroorotase, homodimeric type (RefSeq), at 2,503,566 to 2,504,603 _2371 Dshi_2372: Dshi_2372 - orotate phosphoribosyltransferase (RefSeq), at 2,504,743 to 2,505,423 _2372 Dshi_2373: Dshi_2373 - replicative DNA helicase (RefSeq), at 2,505,654 to 2,507,174 _2373 Position (kb) 2504 2505 2506Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2503.759 kb on - strand, within Dshi_2371at 2503.795 kb on - strand, within Dshi_2371at 2503.859 kb on + strand, within Dshi_2371at 2503.955 kb on + strand, within Dshi_2371at 2504.039 kb on - strand, within Dshi_2371at 2504.056 kb on + strand, within Dshi_2371at 2504.114 kb on + strand, within Dshi_2371at 2504.143 kb on + strand, within Dshi_2371at 2504.213 kb on - strand, within Dshi_2371at 2504.225 kb on + strand, within Dshi_2371at 2504.432 kb on - strand, within Dshi_2371at 2504.509 kb on + strandat 2504.524 kb on - strandat 2504.559 kb on - strandat 2504.693 kb on - strandat 2504.714 kb on - strandat 2504.789 kb on + strandat 2504.797 kb on - strandat 2504.857 kb on + strand, within Dshi_2372at 2504.870 kb on - strand, within Dshi_2372at 2504.893 kb on - strand, within Dshi_2372at 2505.096 kb on + strand, within Dshi_2372at 2505.104 kb on - strand, within Dshi_2372at 2505.142 kb on + strand, within Dshi_2372at 2505.294 kb on + strand, within Dshi_2372at 2505.302 kb on - strand, within Dshi_2372at 2505.302 kb on - strand, within Dshi_2372

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,503,759 - Dshi_2371 0.19 +1.0
2,503,795 - Dshi_2371 0.22 -3.9
2,503,859 + Dshi_2371 0.28 -5.4
2,503,955 + Dshi_2371 0.37 -2.6
2,504,039 - Dshi_2371 0.46 -1.5
2,504,056 + Dshi_2371 0.47 -2.1
2,504,114 + Dshi_2371 0.53 -4.4
2,504,143 + Dshi_2371 0.56 -3.0
2,504,213 - Dshi_2371 0.62 -2.3
2,504,225 + Dshi_2371 0.63 -1.2
2,504,432 - Dshi_2371 0.83 -1.9
2,504,509 + -2.8
2,504,524 - -2.6
2,504,559 - -3.9
2,504,693 - +0.1
2,504,714 - -1.9
2,504,789 + -4.1
2,504,797 - -3.4
2,504,857 + Dshi_2372 0.17 -2.3
2,504,870 - Dshi_2372 0.19 -3.4
2,504,893 - Dshi_2372 0.22 -5.6
2,505,096 + Dshi_2372 0.52 -3.2
2,505,104 - Dshi_2372 0.53 -3.0
2,505,142 + Dshi_2372 0.59 -3.7
2,505,294 + Dshi_2372 0.81 -3.6
2,505,302 - Dshi_2372 0.82 -4.0
2,505,302 - Dshi_2372 0.82 -2.1

Or see this region's nucleotide sequence