Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2272

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2270 and Dshi_2271 overlap by 1 nucleotidesDshi_2271 and Dshi_2272 are separated by 14 nucleotidesDshi_2272 and Dshi_2273 are separated by 79 nucleotides Dshi_2270: Dshi_2270 - hypothetical protein (RefSeq), at 2,394,227 to 2,394,736 _2270 Dshi_2271: Dshi_2271 - transcriptional regulator, TetR family (RefSeq), at 2,394,736 to 2,395,365 _2271 Dshi_2272: Dshi_2272 - hypothetical protein (RefSeq), at 2,395,380 to 2,395,685 _2272 Dshi_2273: Dshi_2273 - Homoserine dehydrogenase (RefSeq), at 2,395,765 to 2,397,051 _2273 Position (kb) 2395 2396Strain fitness (log2 ratio) -2 -1 0 1 2at 2394.383 kb on - strand, within Dshi_2270at 2394.423 kb on - strand, within Dshi_2270at 2394.460 kb on - strand, within Dshi_2270at 2394.493 kb on + strand, within Dshi_2270at 2394.524 kb on - strand, within Dshi_2270at 2394.529 kb on - strand, within Dshi_2270at 2394.573 kb on + strand, within Dshi_2270at 2394.633 kb on - strand, within Dshi_2270at 2394.691 kb on + strandat 2394.704 kb on - strandat 2394.729 kb on - strandat 2394.729 kb on - strandat 2394.729 kb on - strandat 2394.809 kb on + strand, within Dshi_2271at 2394.904 kb on - strand, within Dshi_2271at 2394.970 kb on + strand, within Dshi_2271at 2395.017 kb on + strand, within Dshi_2271at 2395.025 kb on - strand, within Dshi_2271at 2395.030 kb on - strand, within Dshi_2271at 2395.040 kb on - strand, within Dshi_2271at 2395.053 kb on - strand, within Dshi_2271at 2395.131 kb on - strand, within Dshi_2271at 2395.136 kb on + strand, within Dshi_2271at 2395.164 kb on - strand, within Dshi_2271at 2395.173 kb on - strand, within Dshi_2271at 2395.208 kb on - strand, within Dshi_2271at 2395.219 kb on - strand, within Dshi_2271at 2395.234 kb on - strand, within Dshi_2271at 2395.267 kb on + strand, within Dshi_2271at 2395.295 kb on + strand, within Dshi_2271at 2395.303 kb on - strandat 2395.320 kb on + strandat 2395.374 kb on + strandat 2395.378 kb on + strandat 2395.441 kb on + strand, within Dshi_2272at 2395.441 kb on + strand, within Dshi_2272at 2395.449 kb on - strand, within Dshi_2272at 2395.492 kb on - strand, within Dshi_2272at 2395.532 kb on + strand, within Dshi_2272at 2395.540 kb on - strand, within Dshi_2272at 2395.557 kb on - strand, within Dshi_2272at 2395.594 kb on - strand, within Dshi_2272at 2395.614 kb on - strand, within Dshi_2272at 2395.628 kb on - strand, within Dshi_2272at 2395.666 kb on + strandat 2395.666 kb on + strandat 2395.671 kb on + strandat 2395.746 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,394,383 - Dshi_2270 0.31 +0.1
2,394,423 - Dshi_2270 0.38 -0.5
2,394,460 - Dshi_2270 0.46 -2.5
2,394,493 + Dshi_2270 0.52 +0.1
2,394,524 - Dshi_2270 0.58 +1.7
2,394,529 - Dshi_2270 0.59 -0.0
2,394,573 + Dshi_2270 0.68 -0.1
2,394,633 - Dshi_2270 0.80 -0.0
2,394,691 + -0.6
2,394,704 - -1.0
2,394,729 - +0.2
2,394,729 - +0.3
2,394,729 - -0.2
2,394,809 + Dshi_2271 0.12 +0.3
2,394,904 - Dshi_2271 0.27 -0.5
2,394,970 + Dshi_2271 0.37 -0.6
2,395,017 + Dshi_2271 0.45 -0.8
2,395,025 - Dshi_2271 0.46 -1.4
2,395,030 - Dshi_2271 0.47 -0.6
2,395,040 - Dshi_2271 0.48 +1.0
2,395,053 - Dshi_2271 0.50 -0.8
2,395,131 - Dshi_2271 0.63 -0.0
2,395,136 + Dshi_2271 0.63 -1.0
2,395,164 - Dshi_2271 0.68 -1.1
2,395,173 - Dshi_2271 0.69 -0.6
2,395,208 - Dshi_2271 0.75 -0.4
2,395,219 - Dshi_2271 0.77 -0.3
2,395,234 - Dshi_2271 0.79 +2.0
2,395,267 + Dshi_2271 0.84 -0.9
2,395,295 + Dshi_2271 0.89 -0.6
2,395,303 - -1.2
2,395,320 + -0.6
2,395,374 + +0.5
2,395,378 + -1.2
2,395,441 + Dshi_2272 0.20 -0.8
2,395,441 + Dshi_2272 0.20 -0.5
2,395,449 - Dshi_2272 0.23 -1.1
2,395,492 - Dshi_2272 0.37 -0.2
2,395,532 + Dshi_2272 0.50 -0.2
2,395,540 - Dshi_2272 0.52 +0.6
2,395,557 - Dshi_2272 0.58 -0.5
2,395,594 - Dshi_2272 0.70 -0.4
2,395,614 - Dshi_2272 0.76 -1.9
2,395,628 - Dshi_2272 0.81 -0.7
2,395,666 + -0.3
2,395,666 + +0.5
2,395,671 + -1.4
2,395,746 + -0.9

Or see this region's nucleotide sequence