Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1701 and Dshi_1702 overlap by 4 nucleotides Dshi_1702 and Dshi_1703 overlap by 4 nucleotides Dshi_1703 and Dshi_1704 are separated by 77 nucleotides
Dshi_1701: Dshi_1701 - ABC-3 protein (RefSeq), at 1,770,402 to 1,771,202
_1701
Dshi_1702: Dshi_1702 - ABC transporter related (RefSeq), at 1,771,199 to 1,771,942
_1702
Dshi_1703: Dshi_1703 - putative ferric uptake regulator, Fur family (RefSeq), at 1,771,939 to 1,772,436
_1703
Dshi_1704: Dshi_1704 - periplasmic solute binding protein (RefSeq), at 1,772,514 to 1,773,584
_1704
Position (kb)
1771
1772
1773 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1771.164 kb on + strand at 1771.265 kb on - strand at 1771.298 kb on - strand, within Dshi_1702 at 1771.330 kb on - strand, within Dshi_1702 at 1771.509 kb on - strand, within Dshi_1702 at 1771.563 kb on + strand, within Dshi_1702 at 1771.563 kb on + strand, within Dshi_1702 at 1771.599 kb on - strand, within Dshi_1702 at 1771.674 kb on + strand, within Dshi_1702 at 1771.822 kb on - strand, within Dshi_1702 at 1771.891 kb on - strand at 1771.891 kb on - strand at 1771.891 kb on - strand at 1771.891 kb on - strand at 1771.891 kb on - strand at 1771.891 kb on - strand at 1771.977 kb on - strand at 1772.132 kb on - strand, within Dshi_1703 at 1772.137 kb on - strand at 1772.161 kb on + strand, within Dshi_1703 at 1772.523 kb on + strand at 1772.568 kb on + strand at 1772.751 kb on + strand, within Dshi_1704 at 1772.792 kb on - strand, within Dshi_1704 at 1772.807 kb on - strand, within Dshi_1704 at 1772.822 kb on + strand, within Dshi_1704 at 1773.205 kb on - strand at 1773.314 kb on - strand, within Dshi_1704 at 1773.364 kb on - strand, within Dshi_1704 at 1773.392 kb on + strand, within Dshi_1704
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,771,164 + -1.7 1,771,265 - +0.6 1,771,298 - Dshi_1702 0.13 -1.1 1,771,330 - Dshi_1702 0.18 -1.0 1,771,509 - Dshi_1702 0.42 +0.7 1,771,563 + Dshi_1702 0.49 -1.6 1,771,563 + Dshi_1702 0.49 -3.6 1,771,599 - Dshi_1702 0.54 -1.6 1,771,674 + Dshi_1702 0.64 -0.9 1,771,822 - Dshi_1702 0.84 -0.1 1,771,891 - -1.7 1,771,891 - -1.1 1,771,891 - -1.2 1,771,891 - -0.8 1,771,891 - -1.5 1,771,891 - +0.6 1,771,977 - -0.8 1,772,132 - Dshi_1703 0.39 -2.3 1,772,137 - -1.7 1,772,161 + Dshi_1703 0.45 -1.5 1,772,523 + -1.7 1,772,568 + -0.7 1,772,751 + Dshi_1704 0.22 -2.9 1,772,792 - Dshi_1704 0.26 -1.2 1,772,807 - Dshi_1704 0.27 -3.0 1,772,822 + Dshi_1704 0.29 -0.6 1,773,205 - -0.4 1,773,314 - Dshi_1704 0.75 -0.9 1,773,364 - Dshi_1704 0.79 -1.4 1,773,392 + Dshi_1704 0.82 -0.1
Or see this region's nucleotide sequence