Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1572 and Dshi_1573 overlap by 4 nucleotides Dshi_1573 and Dshi_1574 are separated by 61 nucleotides
Dshi_1572: Dshi_1572 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,637,185 to 1,638,600
_1572
Dshi_1573: Dshi_1573 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,638,597 to 1,640,900
_1573
Dshi_1574: Dshi_1574 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,640,962 to 1,642,326
_1574
Position (kb)
1638
1639
1640
1641 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1638.841 kb on + strand, within Dshi_1573 at 1638.936 kb on + strand, within Dshi_1573 at 1639.407 kb on + strand, within Dshi_1573 at 1639.618 kb on + strand, within Dshi_1573 at 1639.703 kb on - strand, within Dshi_1573 at 1639.948 kb on + strand, within Dshi_1573 at 1639.995 kb on - strand, within Dshi_1573 at 1640.813 kb on + strand at 1640.846 kb on + strand at 1640.939 kb on - strand at 1641.035 kb on + strand at 1641.086 kb on - strand at 1641.103 kb on + strand, within Dshi_1574 at 1641.137 kb on - strand, within Dshi_1574 at 1641.702 kb on - strand, within Dshi_1574 at 1641.810 kb on - strand, within Dshi_1574 at 1641.810 kb on - strand, within Dshi_1574 at 1641.894 kb on - strand, within Dshi_1574
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,638,841 + Dshi_1573 0.11 -1.6 1,638,936 + Dshi_1573 0.15 +0.1 1,639,407 + Dshi_1573 0.35 -3.0 1,639,618 + Dshi_1573 0.44 -3.0 1,639,703 - Dshi_1573 0.48 -1.9 1,639,948 + Dshi_1573 0.59 -1.2 1,639,995 - Dshi_1573 0.61 -1.4 1,640,813 + -0.4 1,640,846 + -1.6 1,640,939 - -0.6 1,641,035 + -1.3 1,641,086 - -0.5 1,641,103 + Dshi_1574 0.10 -0.4 1,641,137 - Dshi_1574 0.13 -0.0 1,641,702 - Dshi_1574 0.54 +1.9 1,641,810 - Dshi_1574 0.62 -1.0 1,641,810 - Dshi_1574 0.62 +0.0 1,641,894 - Dshi_1574 0.68 -0.4
Or see this region's nucleotide sequence