Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1463

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1461 and Dshi_1462 are separated by 78 nucleotidesDshi_1462 and Dshi_1463 overlap by 4 nucleotidesDshi_1463 and Dshi_1464 are separated by 4 nucleotidesDshi_1464 and Dshi_1465 overlap by 4 nucleotides Dshi_1461: Dshi_1461 - ribosomal protein L27 (RefSeq), at 1,518,373 to 1,518,642 _1461 Dshi_1462: Dshi_1462 - LysE family transport protein (RefSeq), at 1,518,721 to 1,519,377 _1462 Dshi_1463: Dshi_1463 - GCN5-related N-acetyltransferase (RefSeq), at 1,519,374 to 1,519,913 _1463 Dshi_1464: Dshi_1464 - GCN5-related N-acetyltransferase (RefSeq), at 1,519,918 to 1,520,427 _1464 Dshi_1465: Dshi_1465 - GCN5-related N-acetyltransferase (RefSeq), at 1,520,424 to 1,520,951 _1465 Position (kb) 1519 1520Strain fitness (log2 ratio) -1 0 1at 1518.766 kb on + strandat 1518.873 kb on + strand, within Dshi_1462at 1519.105 kb on - strand, within Dshi_1462at 1519.263 kb on + strand, within Dshi_1462at 1519.324 kb on + strandat 1519.518 kb on + strand, within Dshi_1463at 1520.030 kb on + strand, within Dshi_1464at 1520.117 kb on - strand, within Dshi_1464at 1520.197 kb on + strand, within Dshi_1464at 1520.205 kb on - strand, within Dshi_1464at 1520.619 kb on - strand, within Dshi_1465at 1520.714 kb on - strand, within Dshi_1465at 1520.718 kb on + strand, within Dshi_1465at 1520.742 kb on + strand, within Dshi_1465at 1520.742 kb on + strand, within Dshi_1465at 1520.750 kb on - strand, within Dshi_1465at 1520.771 kb on - strand, within Dshi_1465at 1520.862 kb on + strandat 1520.867 kb on + strand, within Dshi_1465at 1520.870 kb on - strand, within Dshi_1465at 1520.875 kb on - strand, within Dshi_1465at 1520.899 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
1,518,766 + +0.1
1,518,873 + Dshi_1462 0.23 -0.0
1,519,105 - Dshi_1462 0.58 +0.6
1,519,263 + Dshi_1462 0.82 +0.3
1,519,324 + +0.2
1,519,518 + Dshi_1463 0.27 -0.8
1,520,030 + Dshi_1464 0.22 +0.2
1,520,117 - Dshi_1464 0.39 -0.4
1,520,197 + Dshi_1464 0.55 +1.1
1,520,205 - Dshi_1464 0.56 -0.8
1,520,619 - Dshi_1465 0.37 -0.5
1,520,714 - Dshi_1465 0.55 +0.8
1,520,718 + Dshi_1465 0.56 +0.3
1,520,742 + Dshi_1465 0.60 -0.9
1,520,742 + Dshi_1465 0.60 +0.1
1,520,750 - Dshi_1465 0.62 -0.4
1,520,771 - Dshi_1465 0.66 -0.1
1,520,862 + +1.4
1,520,867 + Dshi_1465 0.84 -0.3
1,520,870 - Dshi_1465 0.84 +0.3
1,520,875 - Dshi_1465 0.85 +0.5
1,520,899 - -0.1

Or see this region's nucleotide sequence