Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1386

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1384 and Dshi_1385 are separated by 238 nucleotidesDshi_1385 and Dshi_1386 are separated by 3 nucleotidesDshi_1386 and Dshi_1387 are separated by 144 nucleotides Dshi_1384: Dshi_1384 - permease protein of ABC transporter (RefSeq), at 1,437,354 to 1,438,355 _1384 Dshi_1385: Dshi_1385 - Endoribonuclease L-PSP (RefSeq), at 1,438,594 to 1,438,992 _1385 Dshi_1386: Dshi_1386 - hypothetical protein (RefSeq), at 1,438,996 to 1,440,408 _1386 Dshi_1387: Dshi_1387 - ATP-dependent Clp protease, ATP-binding subunit ClpX (RefSeq), at 1,440,553 to 1,441,812 _1387 Position (kb) 1438 1439 1440 1441Strain fitness (log2 ratio) -1 0 1at 1438.234 kb on - strand, within Dshi_1384at 1438.258 kb on - strandat 1438.298 kb on + strandat 1438.488 kb on + strandat 1438.511 kb on - strandat 1438.532 kb on - strandat 1438.537 kb on - strandat 1438.605 kb on + strandat 1438.645 kb on + strand, within Dshi_1385at 1438.696 kb on - strand, within Dshi_1385at 1438.723 kb on + strand, within Dshi_1385at 1438.941 kb on - strand, within Dshi_1385at 1438.999 kb on + strandat 1439.338 kb on - strand, within Dshi_1386at 1439.461 kb on - strand, within Dshi_1386at 1439.539 kb on - strand, within Dshi_1386at 1439.615 kb on - strand, within Dshi_1386at 1439.626 kb on - strand, within Dshi_1386at 1439.801 kb on - strand, within Dshi_1386at 1439.895 kb on + strand, within Dshi_1386at 1439.902 kb on + strand, within Dshi_1386at 1439.918 kb on + strand, within Dshi_1386at 1439.951 kb on + strand, within Dshi_1386at 1440.035 kb on - strand, within Dshi_1386at 1440.038 kb on + strand, within Dshi_1386at 1440.333 kb on + strandat 1440.333 kb on + strandat 1440.341 kb on - strandat 1440.341 kb on - strandat 1440.368 kb on - strandat 1440.422 kb on + strandat 1440.430 kb on - strandat 1440.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,438,234 - Dshi_1384 0.88 -0.2
1,438,258 - -0.3
1,438,298 + -0.1
1,438,488 + -1.0
1,438,511 - -0.0
1,438,532 - -0.4
1,438,537 - -1.4
1,438,605 + +0.2
1,438,645 + Dshi_1385 0.13 -0.3
1,438,696 - Dshi_1385 0.26 +0.0
1,438,723 + Dshi_1385 0.32 -0.0
1,438,941 - Dshi_1385 0.87 +0.9
1,438,999 + -0.9
1,439,338 - Dshi_1386 0.24 -0.4
1,439,461 - Dshi_1386 0.33 -0.2
1,439,539 - Dshi_1386 0.38 +0.3
1,439,615 - Dshi_1386 0.44 -0.5
1,439,626 - Dshi_1386 0.45 +0.1
1,439,801 - Dshi_1386 0.57 +0.1
1,439,895 + Dshi_1386 0.64 +0.0
1,439,902 + Dshi_1386 0.64 -0.2
1,439,918 + Dshi_1386 0.65 -0.2
1,439,951 + Dshi_1386 0.68 -0.5
1,440,035 - Dshi_1386 0.74 +0.4
1,440,038 + Dshi_1386 0.74 +0.8
1,440,333 + -0.9
1,440,333 + +0.8
1,440,341 - -0.6
1,440,341 - +0.1
1,440,368 - +0.7
1,440,422 + -0.9
1,440,430 - -1.1
1,440,590 - +0.1

Or see this region's nucleotide sequence