Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1033

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1031 and Dshi_1032 are separated by 224 nucleotidesDshi_1032 and Dshi_1033 are separated by 81 nucleotidesDshi_1033 and Dshi_1034 overlap by 8 nucleotidesDshi_1034 and Dshi_1035 are separated by 385 nucleotides Dshi_1031: Dshi_1031 - tryptophan synthase, beta subunit (RefSeq), at 1,064,459 to 1,065,691 _1031 Dshi_1032: Dshi_1032 - hypothetical protein (RefSeq), at 1,065,916 to 1,066,362 _1032 Dshi_1033: Dshi_1033 - hypothetical protein (RefSeq), at 1,066,444 to 1,066,914 _1033 Dshi_1034: Dshi_1034 - transcriptional regulator, LuxR family (RefSeq), at 1,066,907 to 1,067,449 _1034 Dshi_1035: Dshi_1035 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,067,835 to 1,068,809 _1035 Position (kb) 1066 1067Strain fitness (log2 ratio) -2 -1 0 1at 1065.951 kb on + strandat 1065.967 kb on + strand, within Dshi_1032at 1066.091 kb on + strand, within Dshi_1032at 1066.095 kb on + strand, within Dshi_1032at 1066.355 kb on - strandat 1066.534 kb on + strand, within Dshi_1033at 1066.542 kb on - strand, within Dshi_1033at 1066.599 kb on + strand, within Dshi_1033at 1067.089 kb on + strand, within Dshi_1034at 1067.234 kb on + strand, within Dshi_1034at 1067.273 kb on - strand, within Dshi_1034at 1067.354 kb on - strand, within Dshi_1034at 1067.435 kb on + strandat 1067.506 kb on - strandat 1067.506 kb on - strandat 1067.753 kb on - strandat 1067.753 kb on - strandat 1067.871 kb on - strandat 1067.886 kb on - strandat 1067.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,065,951 + -0.5
1,065,967 + Dshi_1032 0.11 -0.2
1,066,091 + Dshi_1032 0.39 -0.4
1,066,095 + Dshi_1032 0.40 -0.3
1,066,355 - +0.1
1,066,534 + Dshi_1033 0.19 -1.2
1,066,542 - Dshi_1033 0.21 +0.4
1,066,599 + Dshi_1033 0.33 -1.8
1,067,089 + Dshi_1034 0.34 +1.0
1,067,234 + Dshi_1034 0.60 -0.3
1,067,273 - Dshi_1034 0.67 +0.4
1,067,354 - Dshi_1034 0.82 -0.4
1,067,435 + +0.2
1,067,506 - -1.2
1,067,506 - +0.4
1,067,753 - -0.5
1,067,753 - +0.5
1,067,871 - -0.1
1,067,886 - +0.3
1,067,904 - -2.1

Or see this region's nucleotide sequence