Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0843 and Dshi_0844 overlap by 1 nucleotides Dshi_0844 and Dshi_0845 overlap by 8 nucleotides Dshi_0845 and Dshi_0846 are separated by 34 nucleotides Dshi_0846 and Dshi_0847 overlap by 4 nucleotides
Dshi_0843: Dshi_0843 - thioesterase superfamily protein (RefSeq), at 853,842 to 854,276
_0843
Dshi_0844: Dshi_0844 - thioesterase superfamily protein (RefSeq), at 854,276 to 854,797
_0844
Dshi_0845: Dshi_0845 - MATE efflux family protein (RefSeq), at 854,790 to 856,109
_0845
Dshi_0846: Dshi_0846 - arsenate reductase (RefSeq), at 856,144 to 856,491
_0846
Dshi_0847: Dshi_0847 - Dihydroorotate oxidase (RefSeq), at 856,488 to 857,546
_0847
Position (kb) 854
855
856
857 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 853.815 kb on + strand at 853.816 kb on - strand at 853.831 kb on - strand at 853.838 kb on + strand at 853.838 kb on + strand at 853.846 kb on - strand at 853.857 kb on - strand at 854.042 kb on - strand, within Dshi_0843 at 854.123 kb on - strand, within Dshi_0843 at 854.222 kb on - strand, within Dshi_0843 at 854.284 kb on + strand at 854.682 kb on + strand, within Dshi_0844 at 855.027 kb on + strand, within Dshi_0845 at 855.042 kb on - strand, within Dshi_0845 at 855.053 kb on + strand, within Dshi_0845 at 855.063 kb on + strand, within Dshi_0845 at 855.071 kb on - strand, within Dshi_0845 at 855.102 kb on - strand, within Dshi_0845 at 855.131 kb on + strand, within Dshi_0845 at 855.131 kb on + strand, within Dshi_0845 at 855.139 kb on - strand, within Dshi_0845 at 855.139 kb on - strand, within Dshi_0845 at 855.191 kb on + strand, within Dshi_0845 at 855.358 kb on - strand, within Dshi_0845 at 855.409 kb on + strand, within Dshi_0845 at 855.409 kb on + strand, within Dshi_0845 at 855.448 kb on + strand, within Dshi_0845 at 855.515 kb on - strand, within Dshi_0845 at 855.534 kb on + strand, within Dshi_0845 at 855.655 kb on + strand, within Dshi_0845 at 855.732 kb on + strand, within Dshi_0845 at 855.771 kb on - strand, within Dshi_0845 at 855.861 kb on - strand, within Dshi_0845 at 856.087 kb on - strand at 856.284 kb on - strand, within Dshi_0846 at 856.314 kb on + strand, within Dshi_0846 at 856.345 kb on + strand, within Dshi_0846 at 856.345 kb on + strand, within Dshi_0846 at 856.353 kb on - strand, within Dshi_0846 at 856.429 kb on - strand, within Dshi_0846 at 856.439 kb on - strand, within Dshi_0846 at 856.475 kb on + strand at 856.482 kb on - strand at 856.505 kb on + strand at 856.560 kb on + strand at 856.608 kb on - strand, within Dshi_0847 at 856.618 kb on - strand, within Dshi_0847 at 856.622 kb on + strand, within Dshi_0847 at 856.623 kb on - strand, within Dshi_0847 at 856.672 kb on - strand, within Dshi_0847 at 856.968 kb on - strand, within Dshi_0847 at 856.968 kb on - strand, within Dshi_0847 at 856.969 kb on + strand, within Dshi_0847 at 857.103 kb on - strand, within Dshi_0847
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 853,815 + -0.2 853,816 - +0.3 853,831 - +0.0 853,838 + -3.0 853,838 + +0.1 853,846 - +0.9 853,857 - +0.3 854,042 - Dshi_0843 0.46 -1.3 854,123 - Dshi_0843 0.65 -0.4 854,222 - Dshi_0843 0.87 -0.5 854,284 + -1.5 854,682 + Dshi_0844 0.78 -1.9 855,027 + Dshi_0845 0.18 -1.9 855,042 - Dshi_0845 0.19 -1.0 855,053 + Dshi_0845 0.20 -1.1 855,063 + Dshi_0845 0.21 -2.1 855,071 - Dshi_0845 0.21 -1.9 855,102 - Dshi_0845 0.24 -0.1 855,131 + Dshi_0845 0.26 -0.9 855,131 + Dshi_0845 0.26 -1.2 855,139 - Dshi_0845 0.26 -2.2 855,139 - Dshi_0845 0.26 -0.4 855,191 + Dshi_0845 0.30 -0.5 855,358 - Dshi_0845 0.43 -1.8 855,409 + Dshi_0845 0.47 -2.0 855,409 + Dshi_0845 0.47 -3.2 855,448 + Dshi_0845 0.50 -0.9 855,515 - Dshi_0845 0.55 -0.9 855,534 + Dshi_0845 0.56 -1.8 855,655 + Dshi_0845 0.66 -1.8 855,732 + Dshi_0845 0.71 -2.3 855,771 - Dshi_0845 0.74 -2.2 855,861 - Dshi_0845 0.81 -2.4 856,087 - -1.3 856,284 - Dshi_0846 0.40 -0.4 856,314 + Dshi_0846 0.49 +0.1 856,345 + Dshi_0846 0.58 -1.8 856,345 + Dshi_0846 0.58 +0.2 856,353 - Dshi_0846 0.60 -0.6 856,429 - Dshi_0846 0.82 -0.9 856,439 - Dshi_0846 0.85 +0.1 856,475 + -0.2 856,482 - -0.7 856,505 + -2.1 856,560 + -1.7 856,608 - Dshi_0847 0.11 -2.8 856,618 - Dshi_0847 0.12 -2.6 856,622 + Dshi_0847 0.13 -3.3 856,623 - Dshi_0847 0.13 -2.4 856,672 - Dshi_0847 0.17 -2.6 856,968 - Dshi_0847 0.45 -3.9 856,968 - Dshi_0847 0.45 -4.4 856,969 + Dshi_0847 0.45 +0.4 857,103 - Dshi_0847 0.58 -3.7
Or see this region's nucleotide sequence