Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0824 and Dshi_0825 are separated by 135 nucleotides Dshi_0825 and Dshi_0826 are separated by 180 nucleotides
Dshi_0824: Dshi_0824 - histidine kinase (RefSeq), at 829,172 to 830,701
_0824
Dshi_0825: Dshi_0825 - AMP-dependent synthetase and ligase (RefSeq), at 830,837 to 832,729
_0825
Dshi_0826: Dshi_0826 - malic protein NAD-binding (RefSeq), at 832,910 to 835,189
_0826
Position (kb) 830
831
832
833 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 829.921 kb on + strand, within Dshi_0824 at 829.939 kb on + strand, within Dshi_0824 at 829.939 kb on + strand, within Dshi_0824 at 829.952 kb on + strand, within Dshi_0824 at 829.960 kb on - strand, within Dshi_0824 at 829.960 kb on - strand, within Dshi_0824 at 829.970 kb on - strand, within Dshi_0824 at 830.026 kb on - strand, within Dshi_0824 at 830.261 kb on - strand, within Dshi_0824 at 830.261 kb on - strand, within Dshi_0824 at 830.434 kb on + strand, within Dshi_0824 at 830.434 kb on + strand, within Dshi_0824 at 830.434 kb on + strand, within Dshi_0824 at 830.442 kb on - strand, within Dshi_0824 at 830.707 kb on + strand at 830.766 kb on + strand at 830.824 kb on - strand at 830.964 kb on + strand at 830.979 kb on + strand at 831.062 kb on - strand, within Dshi_0825 at 831.138 kb on - strand, within Dshi_0825 at 831.280 kb on + strand, within Dshi_0825 at 831.410 kb on - strand, within Dshi_0825 at 831.452 kb on - strand, within Dshi_0825 at 831.511 kb on + strand, within Dshi_0825 at 831.546 kb on - strand, within Dshi_0825 at 831.596 kb on + strand, within Dshi_0825 at 831.692 kb on + strand, within Dshi_0825 at 831.894 kb on - strand, within Dshi_0825 at 831.916 kb on + strand, within Dshi_0825 at 831.917 kb on - strand, within Dshi_0825 at 831.950 kb on - strand, within Dshi_0825 at 831.987 kb on + strand, within Dshi_0825 at 831.987 kb on + strand, within Dshi_0825 at 831.987 kb on + strand, within Dshi_0825 at 831.987 kb on + strand, within Dshi_0825 at 831.995 kb on - strand, within Dshi_0825 at 831.995 kb on - strand, within Dshi_0825 at 831.995 kb on - strand, within Dshi_0825 at 831.995 kb on - strand, within Dshi_0825 at 831.995 kb on - strand, within Dshi_0825 at 831.997 kb on + strand, within Dshi_0825 at 832.022 kb on - strand, within Dshi_0825 at 832.046 kb on - strand, within Dshi_0825 at 832.145 kb on + strand, within Dshi_0825 at 832.193 kb on + strand, within Dshi_0825 at 832.213 kb on - strand, within Dshi_0825 at 832.579 kb on - strand at 832.614 kb on + strand at 832.707 kb on + strand at 832.707 kb on + strand at 832.715 kb on - strand at 832.715 kb on - strand at 832.715 kb on - strand at 832.717 kb on + strand at 832.765 kb on + strand at 832.949 kb on + strand at 832.993 kb on - strand at 833.070 kb on + strand at 833.152 kb on + strand, within Dshi_0826 at 833.188 kb on - strand, within Dshi_0826 at 833.233 kb on - strand, within Dshi_0826 at 833.274 kb on - strand, within Dshi_0826 at 833.291 kb on - strand, within Dshi_0826 at 833.313 kb on - strand, within Dshi_0826 at 833.383 kb on + strand, within Dshi_0826 at 833.386 kb on + strand, within Dshi_0826 at 833.457 kb on - strand, within Dshi_0826 at 833.658 kb on + strand, within Dshi_0826
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 829,921 + Dshi_0824 0.49 -0.1 829,939 + Dshi_0824 0.50 +0.5 829,939 + Dshi_0824 0.50 +0.8 829,952 + Dshi_0824 0.51 -0.2 829,960 - Dshi_0824 0.52 +0.5 829,960 - Dshi_0824 0.52 +1.4 829,970 - Dshi_0824 0.52 +0.9 830,026 - Dshi_0824 0.56 +0.2 830,261 - Dshi_0824 0.71 -0.4 830,261 - Dshi_0824 0.71 -0.6 830,434 + Dshi_0824 0.82 +0.2 830,434 + Dshi_0824 0.82 +1.1 830,434 + Dshi_0824 0.82 +0.4 830,442 - Dshi_0824 0.83 +0.3 830,707 + +0.3 830,766 + +0.8 830,824 - +0.8 830,964 + -0.3 830,979 + +0.2 831,062 - Dshi_0825 0.12 -0.1 831,138 - Dshi_0825 0.16 -1.4 831,280 + Dshi_0825 0.23 -0.6 831,410 - Dshi_0825 0.30 -1.3 831,452 - Dshi_0825 0.32 -0.6 831,511 + Dshi_0825 0.36 -0.6 831,546 - Dshi_0825 0.37 -3.4 831,596 + Dshi_0825 0.40 -0.7 831,692 + Dshi_0825 0.45 -0.4 831,894 - Dshi_0825 0.56 +0.7 831,916 + Dshi_0825 0.57 +0.6 831,917 - Dshi_0825 0.57 -0.6 831,950 - Dshi_0825 0.59 -0.9 831,987 + Dshi_0825 0.61 -0.3 831,987 + Dshi_0825 0.61 +0.3 831,987 + Dshi_0825 0.61 +0.5 831,987 + Dshi_0825 0.61 -0.4 831,995 - Dshi_0825 0.61 +0.2 831,995 - Dshi_0825 0.61 +0.5 831,995 - Dshi_0825 0.61 -0.4 831,995 - Dshi_0825 0.61 -0.4 831,995 - Dshi_0825 0.61 -1.1 831,997 + Dshi_0825 0.61 +0.5 832,022 - Dshi_0825 0.63 -0.9 832,046 - Dshi_0825 0.64 -0.1 832,145 + Dshi_0825 0.69 -0.1 832,193 + Dshi_0825 0.72 +0.5 832,213 - Dshi_0825 0.73 -0.1 832,579 - -0.1 832,614 + +0.0 832,707 + -1.4 832,707 + -0.1 832,715 - -0.6 832,715 - -0.2 832,715 - -0.7 832,717 + +0.5 832,765 + -0.4 832,949 + -1.9 832,993 - +0.8 833,070 + +0.4 833,152 + Dshi_0826 0.11 -1.9 833,188 - Dshi_0826 0.12 +0.1 833,233 - Dshi_0826 0.14 -0.4 833,274 - Dshi_0826 0.16 -1.1 833,291 - Dshi_0826 0.17 +0.4 833,313 - Dshi_0826 0.18 +0.1 833,383 + Dshi_0826 0.21 +0.3 833,386 + Dshi_0826 0.21 -0.4 833,457 - Dshi_0826 0.24 +0.5 833,658 + Dshi_0826 0.33 -0.1
Or see this region's nucleotide sequence