Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0821 and Dshi_0822 are separated by 197 nucleotides Dshi_0822 and Dshi_0823 are separated by 4 nucleotides
Dshi_0821: Dshi_0821 - Glycine hydroxymethyltransferase (RefSeq), at 825,519 to 826,814
_0821
Dshi_0822: Dshi_0822 - NAD(+) kinase (RefSeq), at 827,012 to 827,779
_0822
Dshi_0823: Dshi_0823 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 827,784 to 829,175
_0823
Position (kb) 827
828 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 826.342 kb on - strand, within Dshi_0821 at 826.435 kb on - strand, within Dshi_0821 at 826.610 kb on + strand, within Dshi_0821 at 826.623 kb on - strand, within Dshi_0821 at 826.643 kb on + strand, within Dshi_0821 at 826.646 kb on - strand, within Dshi_0821 at 826.846 kb on - strand at 826.847 kb on + strand at 827.868 kb on - strand at 827.995 kb on - strand, within Dshi_0823 at 828.010 kb on + strand, within Dshi_0823 at 828.257 kb on + strand, within Dshi_0823 at 828.288 kb on - strand, within Dshi_0823 at 828.432 kb on - strand, within Dshi_0823 at 828.432 kb on - strand, within Dshi_0823 at 828.578 kb on + strand, within Dshi_0823 at 828.607 kb on - strand, within Dshi_0823 at 828.607 kb on - strand, within Dshi_0823 at 828.621 kb on + strand, within Dshi_0823 at 828.638 kb on - strand, within Dshi_0823 at 828.687 kb on + strand, within Dshi_0823 at 828.687 kb on - strand, within Dshi_0823 at 828.694 kb on + strand, within Dshi_0823 at 828.697 kb on - strand, within Dshi_0823
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 826,342 - Dshi_0821 0.64 -2.7 826,435 - Dshi_0821 0.71 -2.8 826,610 + Dshi_0821 0.84 -3.4 826,623 - Dshi_0821 0.85 -1.4 826,643 + Dshi_0821 0.87 -3.9 826,646 - Dshi_0821 0.87 -3.7 826,846 - -2.0 826,847 + -1.5 827,868 - +0.9 827,995 - Dshi_0823 0.15 -0.1 828,010 + Dshi_0823 0.16 +1.2 828,257 + Dshi_0823 0.34 +1.3 828,288 - Dshi_0823 0.36 +0.0 828,432 - Dshi_0823 0.47 +0.6 828,432 - Dshi_0823 0.47 +0.1 828,578 + Dshi_0823 0.57 -1.5 828,607 - Dshi_0823 0.59 +0.1 828,607 - Dshi_0823 0.59 +0.1 828,621 + Dshi_0823 0.60 +0.1 828,638 - Dshi_0823 0.61 +0.8 828,687 + Dshi_0823 0.65 +2.0 828,687 - Dshi_0823 0.65 -0.6 828,694 + Dshi_0823 0.65 -0.1 828,697 - Dshi_0823 0.66 +0.3
Or see this region's nucleotide sequence