Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0683

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0680 and Dshi_0681 overlap by 8 nucleotidesDshi_0681 and Dshi_0682 are separated by 76 nucleotidesDshi_0682 and Dshi_0683 are separated by 176 nucleotidesDshi_0683 and Dshi_0684 overlap by 4 nucleotidesDshi_0684 and Dshi_0685 are separated by 7 nucleotides Dshi_0680: Dshi_0680 - phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq), at 686,761 to 687,834 _0680 Dshi_0681: Dshi_0681 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 687,827 to 688,312 _0681 Dshi_0682: Dshi_0682 - protein of unknown function DUF465 (RefSeq), at 688,389 to 688,613 _0682 Dshi_0683: Dshi_0683 - heat shock protein Hsp20 (RefSeq), at 688,790 to 689,233 _0683 Dshi_0684: Dshi_0684 - protein of unknown function DUF1150 (RefSeq), at 689,230 to 689,457 _0684 Dshi_0685: Dshi_0685 - ApbE family lipoprotein (RefSeq), at 689,465 to 690,361 _0685 Position (kb) 688 689 690Strain fitness (log2 ratio) -1 0 1 2at 688.374 kb on + strandat 688.492 kb on - strand, within Dshi_0682at 688.657 kb on + strandat 688.681 kb on - strandat 688.684 kb on + strandat 688.692 kb on - strandat 688.838 kb on - strand, within Dshi_0683at 688.878 kb on - strand, within Dshi_0683at 689.035 kb on + strand, within Dshi_0683at 689.087 kb on - strand, within Dshi_0683at 689.087 kb on - strand, within Dshi_0683at 689.129 kb on + strand, within Dshi_0683at 689.130 kb on - strand, within Dshi_0683at 689.191 kb on - strandat 689.255 kb on + strand, within Dshi_0684at 689.275 kb on + strand, within Dshi_0684at 689.301 kb on - strand, within Dshi_0684at 689.336 kb on - strand, within Dshi_0684at 689.336 kb on - strand, within Dshi_0684at 689.336 kb on - strand, within Dshi_0684at 689.508 kb on - strandat 689.518 kb on - strandat 689.628 kb on - strand, within Dshi_0685at 689.695 kb on + strand, within Dshi_0685at 689.780 kb on - strand, within Dshi_0685at 689.840 kb on - strand, within Dshi_0685at 689.892 kb on - strand, within Dshi_0685at 689.902 kb on + strand, within Dshi_0685at 689.949 kb on - strand, within Dshi_0685at 689.951 kb on + strand, within Dshi_0685at 690.041 kb on - strand, within Dshi_0685at 690.133 kb on - strand, within Dshi_0685at 690.186 kb on - strand, within Dshi_0685at 690.212 kb on - strand, within Dshi_0685

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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688,374 + -0.5
688,492 - Dshi_0682 0.46 -0.8
688,657 + -0.1
688,681 - +0.4
688,684 + +0.2
688,692 - +0.1
688,838 - Dshi_0683 0.11 -0.2
688,878 - Dshi_0683 0.20 -0.4
689,035 + Dshi_0683 0.55 +0.6
689,087 - Dshi_0683 0.67 +0.1
689,087 - Dshi_0683 0.67 -0.4
689,129 + Dshi_0683 0.76 +0.8
689,130 - Dshi_0683 0.77 +0.2
689,191 - +0.2
689,255 + Dshi_0684 0.11 -0.6
689,275 + Dshi_0684 0.20 +0.8
689,301 - Dshi_0684 0.31 +0.3
689,336 - Dshi_0684 0.46 +0.2
689,336 - Dshi_0684 0.46 +0.0
689,336 - Dshi_0684 0.46 -1.2
689,508 - -0.1
689,518 - +0.3
689,628 - Dshi_0685 0.18 +2.6
689,695 + Dshi_0685 0.26 +0.5
689,780 - Dshi_0685 0.35 +0.1
689,840 - Dshi_0685 0.42 -0.1
689,892 - Dshi_0685 0.48 +0.0
689,902 + Dshi_0685 0.49 -0.3
689,949 - Dshi_0685 0.54 +0.1
689,951 + Dshi_0685 0.54 +0.8
690,041 - Dshi_0685 0.64 +1.3
690,133 - Dshi_0685 0.74 -0.2
690,186 - Dshi_0685 0.80 -0.5
690,212 - Dshi_0685 0.83 -1.2

Or see this region's nucleotide sequence