Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0568

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0567 and Dshi_0568 are separated by 494 nucleotidesDshi_0568 and Dshi_0569 are separated by 387 nucleotides Dshi_0567: Dshi_0567 - TonB family protein (RefSeq), at 555,614 to 556,162 _0567 Dshi_0568: Dshi_0568 - Biopolymer transport protein ExbD/TolR (RefSeq), at 556,657 to 557,049 _0568 Dshi_0569: Dshi_0569 - MotA/TolQ/ExbB proton channel (RefSeq), at 557,437 to 558,129 _0569 Position (kb) 556 557 558Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 555.676 kb on + strand, within Dshi_0567at 555.700 kb on + strand, within Dshi_0567at 555.736 kb on + strand, within Dshi_0567at 555.736 kb on + strand, within Dshi_0567at 555.744 kb on - strand, within Dshi_0567at 555.805 kb on - strand, within Dshi_0567at 555.824 kb on + strand, within Dshi_0567at 555.854 kb on - strand, within Dshi_0567at 555.866 kb on + strand, within Dshi_0567at 555.895 kb on + strand, within Dshi_0567at 555.895 kb on + strand, within Dshi_0567at 555.915 kb on - strand, within Dshi_0567at 555.960 kb on + strand, within Dshi_0567at 555.969 kb on - strand, within Dshi_0567at 556.071 kb on + strand, within Dshi_0567at 556.177 kb on + strandat 556.276 kb on - strandat 556.279 kb on + strandat 556.460 kb on + strandat 556.487 kb on - strandat 556.561 kb on - strandat 556.574 kb on + strandat 556.601 kb on + strandat 556.617 kb on - strandat 556.685 kb on - strandat 556.752 kb on - strand, within Dshi_0568at 556.787 kb on - strand, within Dshi_0568at 556.841 kb on - strand, within Dshi_0568at 556.907 kb on + strandat 557.024 kb on + strandat 557.056 kb on + strandat 557.059 kb on - strandat 557.059 kb on - strandat 557.075 kb on + strandat 557.088 kb on + strandat 557.105 kb on - strandat 557.149 kb on + strandat 557.183 kb on + strandat 557.215 kb on + strandat 557.215 kb on + strandat 557.223 kb on - strandat 557.225 kb on + strandat 557.233 kb on - strandat 557.328 kb on - strandat 557.425 kb on + strandat 557.426 kb on - strandat 557.468 kb on - strandat 557.515 kb on + strand, within Dshi_0569at 557.533 kb on - strand, within Dshi_0569at 557.596 kb on - strand, within Dshi_0569at 557.641 kb on + strand, within Dshi_0569at 557.649 kb on + strand, within Dshi_0569at 557.649 kb on - strand, within Dshi_0569at 557.664 kb on + strand, within Dshi_0569at 557.773 kb on - strand, within Dshi_0569at 557.811 kb on + strand, within Dshi_0569at 557.850 kb on - strand, within Dshi_0569at 557.850 kb on - strand, within Dshi_0569at 557.858 kb on - strand, within Dshi_0569at 557.871 kb on - strand, within Dshi_0569at 557.875 kb on + strand, within Dshi_0569at 557.921 kb on + strand, within Dshi_0569at 557.928 kb on + strand, within Dshi_0569at 557.933 kb on + strand, within Dshi_0569at 557.964 kb on + strand, within Dshi_0569at 557.964 kb on + strand, within Dshi_0569at 557.964 kb on + strand, within Dshi_0569at 557.964 kb on + strand, within Dshi_0569at 557.972 kb on - strand, within Dshi_0569at 557.972 kb on - strand, within Dshi_0569at 557.972 kb on - strand, within Dshi_0569at 558.001 kb on + strand, within Dshi_0569

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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555,676 + Dshi_0567 0.11 -1.8
555,700 + Dshi_0567 0.16 -2.8
555,736 + Dshi_0567 0.22 -0.7
555,736 + Dshi_0567 0.22 -1.1
555,744 - Dshi_0567 0.24 +0.1
555,805 - Dshi_0567 0.35 -0.5
555,824 + Dshi_0567 0.38 -1.4
555,854 - Dshi_0567 0.44 -1.4
555,866 + Dshi_0567 0.46 +0.3
555,895 + Dshi_0567 0.51 -0.9
555,895 + Dshi_0567 0.51 +0.1
555,915 - Dshi_0567 0.55 -1.3
555,960 + Dshi_0567 0.63 -1.0
555,969 - Dshi_0567 0.65 +0.3
556,071 + Dshi_0567 0.83 -0.6
556,177 + -0.1
556,276 - +0.3
556,279 + -0.3
556,460 + +0.6
556,487 - -1.6
556,561 - -0.3
556,574 + -0.1
556,601 + +0.0
556,617 - +0.3
556,685 - -0.1
556,752 - Dshi_0568 0.24 -0.9
556,787 - Dshi_0568 0.33 -0.6
556,841 - Dshi_0568 0.47 -2.2
556,907 + +0.3
557,024 + +0.2
557,056 + -0.4
557,059 - +0.1
557,059 - +0.3
557,075 + -2.5
557,088 + -0.1
557,105 - +0.8
557,149 + +1.3
557,183 + -0.0
557,215 + -0.4
557,215 + -0.2
557,223 - -1.0
557,225 + +0.0
557,233 - -2.0
557,328 - -0.5
557,425 + -0.7
557,426 - +0.6
557,468 - -1.5
557,515 + Dshi_0569 0.11 -0.5
557,533 - Dshi_0569 0.14 +0.6
557,596 - Dshi_0569 0.23 -0.3
557,641 + Dshi_0569 0.29 +0.5
557,649 + Dshi_0569 0.31 +0.0
557,649 - Dshi_0569 0.31 -0.5
557,664 + Dshi_0569 0.33 -0.7
557,773 - Dshi_0569 0.48 -1.2
557,811 + Dshi_0569 0.54 +0.6
557,850 - Dshi_0569 0.60 -0.0
557,850 - Dshi_0569 0.60 +0.5
557,858 - Dshi_0569 0.61 +0.3
557,871 - Dshi_0569 0.63 +0.9
557,875 + Dshi_0569 0.63 -0.1
557,921 + Dshi_0569 0.70 -0.4
557,928 + Dshi_0569 0.71 +2.1
557,933 + Dshi_0569 0.72 -1.5
557,964 + Dshi_0569 0.76 +0.0
557,964 + Dshi_0569 0.76 -1.6
557,964 + Dshi_0569 0.76 -0.5
557,964 + Dshi_0569 0.76 -1.3
557,972 - Dshi_0569 0.77 -0.3
557,972 - Dshi_0569 0.77 +0.3
557,972 - Dshi_0569 0.77 -0.7
558,001 + Dshi_0569 0.81 -0.7

Or see this region's nucleotide sequence