Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0567

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0566 and Dshi_0567 are separated by 52 nucleotidesDshi_0567 and Dshi_0568 are separated by 494 nucleotides Dshi_0566: Dshi_0566 - hypothetical protein (RefSeq), at 554,479 to 555,561 _0566 Dshi_0567: Dshi_0567 - TonB family protein (RefSeq), at 555,614 to 556,162 _0567 Dshi_0568: Dshi_0568 - Biopolymer transport protein ExbD/TolR (RefSeq), at 556,657 to 557,049 _0568 Position (kb) 555 556 557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 554.619 kb on + strand, within Dshi_0566at 554.622 kb on - strand, within Dshi_0566at 554.624 kb on - strand, within Dshi_0566at 554.633 kb on - strand, within Dshi_0566at 554.643 kb on - strand, within Dshi_0566at 554.692 kb on + strand, within Dshi_0566at 554.692 kb on + strand, within Dshi_0566at 554.703 kb on + strand, within Dshi_0566at 554.739 kb on + strand, within Dshi_0566at 554.800 kb on - strand, within Dshi_0566at 554.800 kb on - strand, within Dshi_0566at 554.823 kb on - strand, within Dshi_0566at 554.874 kb on + strand, within Dshi_0566at 554.879 kb on + strand, within Dshi_0566at 554.893 kb on - strand, within Dshi_0566at 554.914 kb on + strand, within Dshi_0566at 554.962 kb on - strand, within Dshi_0566at 554.984 kb on + strand, within Dshi_0566at 554.998 kb on - strand, within Dshi_0566at 555.032 kb on - strand, within Dshi_0566at 555.052 kb on + strand, within Dshi_0566at 555.080 kb on + strand, within Dshi_0566at 555.088 kb on - strand, within Dshi_0566at 555.098 kb on - strand, within Dshi_0566at 555.112 kb on + strand, within Dshi_0566at 555.127 kb on - strand, within Dshi_0566at 555.140 kb on - strand, within Dshi_0566at 555.185 kb on - strand, within Dshi_0566at 555.208 kb on - strand, within Dshi_0566at 555.365 kb on - strand, within Dshi_0566at 555.382 kb on - strand, within Dshi_0566at 555.464 kb on + strandat 555.473 kb on - strandat 555.487 kb on - strandat 555.539 kb on - strandat 555.594 kb on + strandat 555.676 kb on + strand, within Dshi_0567at 555.700 kb on + strand, within Dshi_0567at 555.736 kb on + strand, within Dshi_0567at 555.736 kb on + strand, within Dshi_0567at 555.744 kb on - strand, within Dshi_0567at 555.805 kb on - strand, within Dshi_0567at 555.824 kb on + strand, within Dshi_0567at 555.854 kb on - strand, within Dshi_0567at 555.866 kb on + strand, within Dshi_0567at 555.895 kb on + strand, within Dshi_0567at 555.895 kb on + strand, within Dshi_0567at 555.915 kb on - strand, within Dshi_0567at 555.960 kb on + strand, within Dshi_0567at 555.969 kb on - strand, within Dshi_0567at 556.071 kb on + strand, within Dshi_0567at 556.177 kb on + strandat 556.276 kb on - strandat 556.279 kb on + strandat 556.460 kb on + strandat 556.487 kb on - strandat 556.561 kb on - strandat 556.574 kb on + strandat 556.601 kb on + strandat 556.617 kb on - strandat 556.685 kb on - strandat 556.752 kb on - strand, within Dshi_0568at 556.787 kb on - strand, within Dshi_0568at 556.841 kb on - strand, within Dshi_0568at 556.907 kb on + strandat 557.024 kb on + strandat 557.056 kb on + strandat 557.059 kb on - strandat 557.059 kb on - strandat 557.075 kb on + strandat 557.088 kb on + strandat 557.105 kb on - strandat 557.149 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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554,619 + Dshi_0566 0.13 +0.7
554,622 - Dshi_0566 0.13 -0.5
554,624 - Dshi_0566 0.13 +0.1
554,633 - Dshi_0566 0.14 -0.6
554,643 - Dshi_0566 0.15 -2.6
554,692 + Dshi_0566 0.20 -0.1
554,692 + Dshi_0566 0.20 -0.8
554,703 + Dshi_0566 0.21 -2.0
554,739 + Dshi_0566 0.24 -0.1
554,800 - Dshi_0566 0.30 +1.1
554,800 - Dshi_0566 0.30 -2.5
554,823 - Dshi_0566 0.32 -0.0
554,874 + Dshi_0566 0.36 -1.4
554,879 + Dshi_0566 0.37 -0.2
554,893 - Dshi_0566 0.38 -1.0
554,914 + Dshi_0566 0.40 -0.3
554,962 - Dshi_0566 0.45 +0.9
554,984 + Dshi_0566 0.47 +0.1
554,998 - Dshi_0566 0.48 +0.2
555,032 - Dshi_0566 0.51 -0.1
555,052 + Dshi_0566 0.53 -0.1
555,080 + Dshi_0566 0.55 +0.3
555,088 - Dshi_0566 0.56 -0.2
555,098 - Dshi_0566 0.57 -0.3
555,112 + Dshi_0566 0.58 +2.2
555,127 - Dshi_0566 0.60 -0.5
555,140 - Dshi_0566 0.61 +0.3
555,185 - Dshi_0566 0.65 -0.8
555,208 - Dshi_0566 0.67 -0.1
555,365 - Dshi_0566 0.82 -1.5
555,382 - Dshi_0566 0.83 +0.2
555,464 + -1.8
555,473 - -0.7
555,487 - -1.3
555,539 - +0.0
555,594 + +1.6
555,676 + Dshi_0567 0.11 -1.8
555,700 + Dshi_0567 0.16 -2.8
555,736 + Dshi_0567 0.22 -0.7
555,736 + Dshi_0567 0.22 -1.1
555,744 - Dshi_0567 0.24 +0.1
555,805 - Dshi_0567 0.35 -0.5
555,824 + Dshi_0567 0.38 -1.4
555,854 - Dshi_0567 0.44 -1.4
555,866 + Dshi_0567 0.46 +0.3
555,895 + Dshi_0567 0.51 -0.9
555,895 + Dshi_0567 0.51 +0.1
555,915 - Dshi_0567 0.55 -1.3
555,960 + Dshi_0567 0.63 -1.0
555,969 - Dshi_0567 0.65 +0.3
556,071 + Dshi_0567 0.83 -0.6
556,177 + -0.1
556,276 - +0.3
556,279 + -0.3
556,460 + +0.6
556,487 - -1.6
556,561 - -0.3
556,574 + -0.1
556,601 + +0.0
556,617 - +0.3
556,685 - -0.1
556,752 - Dshi_0568 0.24 -0.9
556,787 - Dshi_0568 0.33 -0.6
556,841 - Dshi_0568 0.47 -2.2
556,907 + +0.3
557,024 + +0.2
557,056 + -0.4
557,059 - +0.1
557,059 - +0.3
557,075 + -2.5
557,088 + -0.1
557,105 - +0.8
557,149 + +1.3

Or see this region's nucleotide sequence