Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0449

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0448 and Dshi_0449 are separated by 54 nucleotidesDshi_0449 and Dshi_0450 are separated by 103 nucleotidesDshi_0450 and Dshi_0451 are separated by 26 nucleotides Dshi_0448: Dshi_0448 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 436,086 to 437,696 _0448 Dshi_0449: Dshi_0449 - two component transcriptional regulator, winged helix family (RefSeq), at 437,751 to 438,434 _0449 Dshi_0450: Dshi_0450 - coenzyme PQQ biosynthesis protein A (RefSeq), at 438,538 to 438,636 _0450 Dshi_0451: Dshi_0451 - coenzyme PQQ biosynthesis protein B (RefSeq), at 438,663 to 439,556 _0451 Position (kb) 437 438 439Strain fitness (log2 ratio) -2 -1 0 1 2at 436.751 kb on + strand, within Dshi_0448at 436.751 kb on + strand, within Dshi_0448at 436.767 kb on + strand, within Dshi_0448at 436.850 kb on + strand, within Dshi_0448at 436.857 kb on + strand, within Dshi_0448at 436.884 kb on + strand, within Dshi_0448at 436.893 kb on + strand, within Dshi_0448at 436.898 kb on + strand, within Dshi_0448at 436.957 kb on - strand, within Dshi_0448at 436.978 kb on + strand, within Dshi_0448at 437.024 kb on + strand, within Dshi_0448at 437.027 kb on - strand, within Dshi_0448at 437.043 kb on + strand, within Dshi_0448at 437.052 kb on + strand, within Dshi_0448at 437.075 kb on - strand, within Dshi_0448at 437.106 kb on - strand, within Dshi_0448at 437.170 kb on - strand, within Dshi_0448at 437.170 kb on - strand, within Dshi_0448at 437.176 kb on + strand, within Dshi_0448at 437.177 kb on + strand, within Dshi_0448at 437.184 kb on - strand, within Dshi_0448at 437.196 kb on + strand, within Dshi_0448at 437.201 kb on + strand, within Dshi_0448at 437.209 kb on - strand, within Dshi_0448at 437.209 kb on - strand, within Dshi_0448at 437.224 kb on - strand, within Dshi_0448at 437.227 kb on + strand, within Dshi_0448at 437.235 kb on - strand, within Dshi_0448at 437.235 kb on - strand, within Dshi_0448at 437.235 kb on - strand, within Dshi_0448at 437.253 kb on + strand, within Dshi_0448at 437.260 kb on - strand, within Dshi_0448at 437.262 kb on + strand, within Dshi_0448at 437.315 kb on + strand, within Dshi_0448at 437.318 kb on - strand, within Dshi_0448at 437.323 kb on - strand, within Dshi_0448at 437.323 kb on - strand, within Dshi_0448at 437.323 kb on - strand, within Dshi_0448at 437.325 kb on + strand, within Dshi_0448at 437.329 kb on - strand, within Dshi_0448at 437.389 kb on + strand, within Dshi_0448at 437.410 kb on + strand, within Dshi_0448at 437.410 kb on + strand, within Dshi_0448at 437.432 kb on + strand, within Dshi_0448at 437.537 kb on - strandat 437.542 kb on - strandat 437.612 kb on + strandat 437.617 kb on + strandat 437.648 kb on + strandat 437.650 kb on + strandat 437.735 kb on - strandat 437.735 kb on - strandat 437.772 kb on + strandat 437.909 kb on - strand, within Dshi_0449at 437.995 kb on - strand, within Dshi_0449at 438.112 kb on - strand, within Dshi_0449at 438.125 kb on + strand, within Dshi_0449at 438.151 kb on - strand, within Dshi_0449at 438.152 kb on - strand, within Dshi_0449at 438.179 kb on - strand, within Dshi_0449at 438.181 kb on + strand, within Dshi_0449at 438.189 kb on - strand, within Dshi_0449at 438.272 kb on + strand, within Dshi_0449at 438.280 kb on - strand, within Dshi_0449at 438.298 kb on - strand, within Dshi_0449at 438.309 kb on + strand, within Dshi_0449at 438.322 kb on - strand, within Dshi_0449at 438.373 kb on + strandat 438.378 kb on + strandat 438.386 kb on - strandat 438.420 kb on + strandat 438.420 kb on - strandat 438.428 kb on - strandat 438.428 kb on - strandat 438.430 kb on + strandat 438.430 kb on + strandat 438.430 kb on + strandat 438.462 kb on + strandat 438.471 kb on - strandat 438.486 kb on + strandat 438.490 kb on + strandat 438.525 kb on - strandat 438.553 kb on - strand, within Dshi_0450at 438.553 kb on - strandat 438.561 kb on - strand, within Dshi_0450at 438.591 kb on + strand, within Dshi_0450at 438.599 kb on + strand, within Dshi_0450at 438.606 kb on - strand, within Dshi_0450at 438.608 kb on + strand, within Dshi_0450at 438.616 kb on - strand, within Dshi_0450at 438.616 kb on - strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.630 kb on + strandat 438.633 kb on - strandat 438.633 kb on - strandat 438.633 kb on - strandat 438.651 kb on + strandat 438.659 kb on - strandat 438.737 kb on + strandat 438.743 kb on + strandat 438.752 kb on + strandat 438.773 kb on + strand, within Dshi_0451at 438.774 kb on + strand, within Dshi_0451at 438.776 kb on - strand, within Dshi_0451at 438.782 kb on - strand, within Dshi_0451at 438.829 kb on - strand, within Dshi_0451at 438.870 kb on - strand, within Dshi_0451at 438.875 kb on + strand, within Dshi_0451at 438.877 kb on + strand, within Dshi_0451at 438.880 kb on - strand, within Dshi_0451at 438.880 kb on - strand, within Dshi_0451at 438.890 kb on - strand, within Dshi_0451at 438.890 kb on - strand, within Dshi_0451at 438.892 kb on + strand, within Dshi_0451at 438.900 kb on - strand, within Dshi_0451at 438.900 kb on - strand, within Dshi_0451at 438.900 kb on - strand, within Dshi_0451at 438.909 kb on + strand, within Dshi_0451at 438.944 kb on + strand, within Dshi_0451at 438.948 kb on + strand, within Dshi_0451at 438.956 kb on - strand, within Dshi_0451at 438.983 kb on - strand, within Dshi_0451at 439.051 kb on - strand, within Dshi_0451at 439.145 kb on - strand, within Dshi_0451at 439.148 kb on + strand, within Dshi_0451at 439.154 kb on + strand, within Dshi_0451at 439.190 kb on + strand, within Dshi_0451at 439.190 kb on + strand, within Dshi_0451at 439.236 kb on + strand, within Dshi_0451at 439.240 kb on - strand, within Dshi_0451at 439.250 kb on - strand, within Dshi_0451at 439.265 kb on + strand, within Dshi_0451at 439.313 kb on + strand, within Dshi_0451at 439.326 kb on + strand, within Dshi_0451at 439.370 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.425 kb on - strand, within Dshi_0451

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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436,751 + Dshi_0448 0.41 +0.2
436,751 + Dshi_0448 0.41 -2.2
436,767 + Dshi_0448 0.42 +0.6
436,850 + Dshi_0448 0.47 +0.3
436,857 + Dshi_0448 0.48 +0.1
436,884 + Dshi_0448 0.50 -0.8
436,893 + Dshi_0448 0.50 -1.8
436,898 + Dshi_0448 0.50 +0.5
436,957 - Dshi_0448 0.54 -0.6
436,978 + Dshi_0448 0.55 -0.1
437,024 + Dshi_0448 0.58 -0.1
437,027 - Dshi_0448 0.58 +0.8
437,043 + Dshi_0448 0.59 +0.0
437,052 + Dshi_0448 0.60 -1.0
437,075 - Dshi_0448 0.61 +1.4
437,106 - Dshi_0448 0.63 -0.2
437,170 - Dshi_0448 0.67 -1.1
437,170 - Dshi_0448 0.67 -0.2
437,176 + Dshi_0448 0.68 -0.4
437,177 + Dshi_0448 0.68 -0.3
437,184 - Dshi_0448 0.68 -0.2
437,196 + Dshi_0448 0.69 +0.0
437,201 + Dshi_0448 0.69 -1.9
437,209 - Dshi_0448 0.70 -2.5
437,209 - Dshi_0448 0.70 -0.0
437,224 - Dshi_0448 0.71 +0.1
437,227 + Dshi_0448 0.71 -1.6
437,235 - Dshi_0448 0.71 +1.2
437,235 - Dshi_0448 0.71 -0.5
437,235 - Dshi_0448 0.71 -0.7
437,253 + Dshi_0448 0.72 +0.4
437,260 - Dshi_0448 0.73 +0.3
437,262 + Dshi_0448 0.73 -0.4
437,315 + Dshi_0448 0.76 -0.2
437,318 - Dshi_0448 0.76 -0.2
437,323 - Dshi_0448 0.77 -1.0
437,323 - Dshi_0448 0.77 +0.5
437,323 - Dshi_0448 0.77 -0.5
437,325 + Dshi_0448 0.77 +0.3
437,329 - Dshi_0448 0.77 +0.4
437,389 + Dshi_0448 0.81 -1.4
437,410 + Dshi_0448 0.82 -0.4
437,410 + Dshi_0448 0.82 -1.2
437,432 + Dshi_0448 0.84 +0.5
437,537 - +0.2
437,542 - -0.9
437,612 + -0.2
437,617 + -2.3
437,648 + +0.9
437,650 + +0.3
437,735 - -2.0
437,735 - +1.2
437,772 + +0.4
437,909 - Dshi_0449 0.23 +0.4
437,995 - Dshi_0449 0.36 +1.0
438,112 - Dshi_0449 0.53 +1.3
438,125 + Dshi_0449 0.55 -1.3
438,151 - Dshi_0449 0.58 +0.5
438,152 - Dshi_0449 0.59 +0.3
438,179 - Dshi_0449 0.63 +0.7
438,181 + Dshi_0449 0.63 +0.5
438,189 - Dshi_0449 0.64 -0.3
438,272 + Dshi_0449 0.76 +0.2
438,280 - Dshi_0449 0.77 -0.1
438,298 - Dshi_0449 0.80 -2.5
438,309 + Dshi_0449 0.82 +1.0
438,322 - Dshi_0449 0.83 -0.9
438,373 + +0.1
438,378 + +0.2
438,386 - -1.0
438,420 + -0.7
438,420 - +0.1
438,428 - +0.0
438,428 - -0.1
438,430 + +0.5
438,430 + -0.1
438,430 + -0.6
438,462 + -0.1
438,471 - +0.9
438,486 + -0.4
438,490 + +0.1
438,525 - +0.3
438,553 - Dshi_0450 0.15 +0.9
438,553 - +2.5
438,561 - Dshi_0450 0.23 +0.3
438,591 + Dshi_0450 0.54 -1.0
438,599 + Dshi_0450 0.62 -0.4
438,606 - Dshi_0450 0.69 -0.2
438,608 + Dshi_0450 0.71 +0.4
438,616 - Dshi_0450 0.79 +0.5
438,616 - Dshi_0450 0.79 +1.0
438,625 + Dshi_0450 0.88 +0.1
438,625 + Dshi_0450 0.88 +0.5
438,625 + Dshi_0450 0.88 +0.8
438,625 + Dshi_0450 0.88 -0.0
438,625 + Dshi_0450 0.88 -2.3
438,630 + -0.6
438,633 - +0.1
438,633 - -0.2
438,633 - -0.1
438,651 + +0.2
438,659 - +0.3
438,737 + -0.3
438,743 + -0.2
438,752 + +0.8
438,773 + Dshi_0451 0.12 +0.1
438,774 + Dshi_0451 0.12 -0.2
438,776 - Dshi_0451 0.13 +0.4
438,782 - Dshi_0451 0.13 +0.5
438,829 - Dshi_0451 0.19 +0.3
438,870 - Dshi_0451 0.23 +0.2
438,875 + Dshi_0451 0.24 +0.5
438,877 + Dshi_0451 0.24 +1.6
438,880 - Dshi_0451 0.24 +0.2
438,880 - Dshi_0451 0.24 -0.7
438,890 - Dshi_0451 0.25 +0.1
438,890 - Dshi_0451 0.25 -0.3
438,892 + Dshi_0451 0.26 +2.3
438,900 - Dshi_0451 0.27 -0.2
438,900 - Dshi_0451 0.27 +0.8
438,900 - Dshi_0451 0.27 -1.4
438,909 + Dshi_0451 0.28 +0.1
438,944 + Dshi_0451 0.31 +0.4
438,948 + Dshi_0451 0.32 +0.1
438,956 - Dshi_0451 0.33 +1.2
438,983 - Dshi_0451 0.36 -0.0
439,051 - Dshi_0451 0.43 -0.2
439,145 - Dshi_0451 0.54 -0.9
439,148 + Dshi_0451 0.54 -2.5
439,154 + Dshi_0451 0.55 +0.3
439,190 + Dshi_0451 0.59 -0.0
439,190 + Dshi_0451 0.59 -0.5
439,236 + Dshi_0451 0.64 +1.6
439,240 - Dshi_0451 0.65 -0.0
439,250 - Dshi_0451 0.66 +0.4
439,265 + Dshi_0451 0.67 +0.2
439,313 + Dshi_0451 0.73 -0.0
439,326 + Dshi_0451 0.74 +0.1
439,370 + Dshi_0451 0.79 -0.5
439,393 + Dshi_0451 0.82 +0.0
439,393 + Dshi_0451 0.82 -0.8
439,393 + Dshi_0451 0.82 -0.3
439,393 + Dshi_0451 0.82 -0.0
439,393 + Dshi_0451 0.82 +0.6
439,393 + Dshi_0451 0.82 +0.0
439,425 - Dshi_0451 0.85 -0.6

Or see this region's nucleotide sequence