Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0363 and Dshi_0364 overlap by 4 nucleotides Dshi_0364 and Dshi_0365 are separated by 25 nucleotides Dshi_0365 and Dshi_0366 are separated by 6 nucleotides
Dshi_0363: Dshi_0363 - DNA mismatch repair protein MutL (RefSeq), at 346,074 to 347,939
_0363
Dshi_0364: Dshi_0364 - protein of unknown function DUF195 (RefSeq), at 347,936 to 349,168
_0364
Dshi_0365: Dshi_0365 - anti-ECFsigma factor, ChrR (RefSeq), at 349,194 to 349,865
_0365
Dshi_0366: Dshi_0366 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 349,872 to 350,441
_0366
Position (kb) 347
348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 346.937 kb on + strand, within Dshi_0363 at 347.029 kb on + strand, within Dshi_0363 at 347.346 kb on + strand, within Dshi_0363 at 347.460 kb on + strand, within Dshi_0363 at 347.609 kb on + strand, within Dshi_0363 at 347.618 kb on + strand, within Dshi_0363 at 347.685 kb on + strand, within Dshi_0363 at 347.720 kb on + strand, within Dshi_0363 at 347.782 kb on - strand at 347.790 kb on - strand at 347.799 kb on - strand at 348.122 kb on + strand, within Dshi_0364 at 348.127 kb on + strand, within Dshi_0364 at 348.234 kb on - strand, within Dshi_0364 at 348.322 kb on - strand, within Dshi_0364 at 348.392 kb on - strand, within Dshi_0364 at 348.394 kb on + strand, within Dshi_0364 at 348.403 kb on - strand, within Dshi_0364 at 348.747 kb on - strand, within Dshi_0364 at 348.856 kb on + strand, within Dshi_0364 at 348.864 kb on - strand, within Dshi_0364 at 348.884 kb on - strand, within Dshi_0364 at 348.940 kb on + strand, within Dshi_0364 at 349.123 kb on + strand at 349.190 kb on + strand at 349.281 kb on - strand, within Dshi_0365 at 349.281 kb on - strand, within Dshi_0365 at 349.912 kb on - strand at 349.946 kb on - strand, within Dshi_0366 at 350.079 kb on + strand, within Dshi_0366 at 350.082 kb on - strand, within Dshi_0366
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 346,937 + Dshi_0363 0.46 +0.8 347,029 + Dshi_0363 0.51 -0.1 347,346 + Dshi_0363 0.68 -0.9 347,460 + Dshi_0363 0.74 -0.2 347,609 + Dshi_0363 0.82 -1.0 347,618 + Dshi_0363 0.83 -0.2 347,685 + Dshi_0363 0.86 -1.0 347,720 + Dshi_0363 0.88 -0.2 347,782 - -0.7 347,790 - -0.5 347,799 - +0.2 348,122 + Dshi_0364 0.15 -0.8 348,127 + Dshi_0364 0.15 -0.5 348,234 - Dshi_0364 0.24 -0.9 348,322 - Dshi_0364 0.31 -1.3 348,392 - Dshi_0364 0.37 -0.9 348,394 + Dshi_0364 0.37 -0.5 348,403 - Dshi_0364 0.38 -1.8 348,747 - Dshi_0364 0.66 -0.7 348,856 + Dshi_0364 0.75 -3.2 348,864 - Dshi_0364 0.75 -0.2 348,884 - Dshi_0364 0.77 -1.0 348,940 + Dshi_0364 0.81 -0.2 349,123 + +1.1 349,190 + -1.3 349,281 - Dshi_0365 0.13 +0.4 349,281 - Dshi_0365 0.13 +1.9 349,912 - +1.3 349,946 - Dshi_0366 0.13 -1.2 350,079 + Dshi_0366 0.36 +0.5 350,082 - Dshi_0366 0.37 +0.8
Or see this region's nucleotide sequence