Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0152

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0150 and Dshi_0151 are separated by 37 nucleotidesDshi_0151 and Dshi_0152 overlap by 4 nucleotidesDshi_0152 and Dshi_0153 are separated by 80 nucleotides Dshi_0150: Dshi_0150 - Lytic transglycosylase catalytic (RefSeq), at 149,400 to 151,349 _0150 Dshi_0151: Dshi_0151 - protein of unknown function DUF6 transmembrane (RefSeq), at 151,387 to 152,265 _0151 Dshi_0152: Dshi_0152 - protein of unknown function DUF752 (RefSeq), at 152,262 to 152,954 _0152 Dshi_0153: Dshi_0153 - FAD dependent oxidoreductase (RefSeq), at 153,035 to 154,093 _0153 Position (kb) 152 153Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 151.306 kb on - strandat 151.419 kb on + strandat 151.442 kb on + strandat 151.464 kb on + strandat 151.517 kb on + strand, within Dshi_0151at 151.525 kb on - strand, within Dshi_0151at 151.543 kb on + strand, within Dshi_0151at 151.546 kb on - strand, within Dshi_0151at 151.663 kb on + strand, within Dshi_0151at 151.671 kb on - strand, within Dshi_0151at 151.776 kb on - strand, within Dshi_0151at 151.992 kb on - strand, within Dshi_0151at 152.189 kb on + strandat 152.263 kb on + strandat 152.328 kb on - strandat 152.455 kb on + strand, within Dshi_0152at 152.749 kb on + strand, within Dshi_0152at 152.782 kb on + strand, within Dshi_0152at 152.786 kb on - strand, within Dshi_0152at 152.801 kb on + strand, within Dshi_0152at 152.902 kb on - strandat 152.907 kb on - strandat 152.921 kb on + strandat 152.958 kb on + strandat 152.966 kb on - strandat 152.973 kb on + strandat 153.097 kb on - strandat 153.108 kb on + strandat 153.118 kb on + strandat 153.126 kb on - strandat 153.143 kb on - strand, within Dshi_0153at 153.145 kb on - strand, within Dshi_0153at 153.287 kb on + strand, within Dshi_0153at 153.301 kb on - strand, within Dshi_0153at 153.378 kb on + strand, within Dshi_0153at 153.414 kb on - strand, within Dshi_0153at 153.448 kb on - strand, within Dshi_0153at 153.529 kb on + strand, within Dshi_0153at 153.547 kb on - strand, within Dshi_0153at 153.569 kb on - strand, within Dshi_0153at 153.634 kb on - strand, within Dshi_0153at 153.738 kb on - strand, within Dshi_0153at 153.775 kb on + strand, within Dshi_0153at 153.780 kb on + strand, within Dshi_0153at 153.780 kb on + strand, within Dshi_0153

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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151,306 - -5.0
151,419 + +0.7
151,442 + -0.4
151,464 + -0.1
151,517 + Dshi_0151 0.15 +0.2
151,525 - Dshi_0151 0.16 +0.3
151,543 + Dshi_0151 0.18 -0.1
151,546 - Dshi_0151 0.18 +1.1
151,663 + Dshi_0151 0.31 -0.0
151,671 - Dshi_0151 0.32 +0.0
151,776 - Dshi_0151 0.44 +0.0
151,992 - Dshi_0151 0.69 +0.5
152,189 + -0.6
152,263 + -0.1
152,328 - -1.2
152,455 + Dshi_0152 0.28 -1.4
152,749 + Dshi_0152 0.70 -1.6
152,782 + Dshi_0152 0.75 +0.8
152,786 - Dshi_0152 0.76 -0.1
152,801 + Dshi_0152 0.78 -0.5
152,902 - +0.2
152,907 - -0.3
152,921 + -0.7
152,958 + +0.2
152,966 - -0.3
152,973 + -0.7
153,097 - -0.5
153,108 + -0.2
153,118 + +1.3
153,126 - +0.1
153,143 - Dshi_0153 0.10 +0.3
153,145 - Dshi_0153 0.10 +0.4
153,287 + Dshi_0153 0.24 +0.3
153,301 - Dshi_0153 0.25 +0.3
153,378 + Dshi_0153 0.32 +0.4
153,414 - Dshi_0153 0.36 -0.9
153,448 - Dshi_0153 0.39 +0.0
153,529 + Dshi_0153 0.47 +0.1
153,547 - Dshi_0153 0.48 +0.5
153,569 - Dshi_0153 0.50 -1.1
153,634 - Dshi_0153 0.57 +0.6
153,738 - Dshi_0153 0.66 +1.6
153,775 + Dshi_0153 0.70 -1.2
153,780 + Dshi_0153 0.70 +0.4
153,780 + Dshi_0153 0.70 +0.1

Or see this region's nucleotide sequence