Strain Fitness in Shewanella oneidensis MR-1 around SOA0160

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
147,083	+		SO_A0158	0.72	+0.4
147,083	+		SO_A0158	0.72	-0.6
147,091	-		SO_A0158	0.74	+0.2
147,097	+		SO_A0158	0.75	-0.9
147,097	+		SO_A0158	0.75	-1.6
147,100	+		SO_A0158	0.76	+2.5
147,100	+		SO_A0158	0.76	+0.7
147,100	+		SO_A0158	0.76	-0.5
147,100	+		SO_A0158	0.76	-1.8
147,100	+		SO_A0158	0.76	-2.1
147,100	+		SO_A0158	0.76	-0.7
147,108	-		SO_A0158	0.78	-1.1
147,108	-		SO_A0158	0.78	+0.3
147,108	-		SO_A0158	0.78	+0.8
147,110	+		SO_A0158	0.78	+0.2
147,126	+		SO_A0158	0.83	+0.9
147,126	+		SO_A0158	0.83	+1.2
147,126	+		SO_A0158	0.83	+2.5
147,126	+		SO_A0158	0.83	+0.2
147,126	+		SO_A0158	0.83	+1.8
147,126	+		SO_A0158	0.83	+0.6
147,126	+		SO_A0158	0.83	+1.7
147,126	+		SO_A0158	0.83	+0.1
147,134	-		SO_A0158	0.85	-0.8
147,134	-		SO_A0158	0.85	-0.5
147,134	-		SO_A0158	0.85	+0.8
147,134	-		SO_A0158	0.85	-1.1
147,134	-		SO_A0158	0.85	+1.1
147,134	-		SO_A0158	0.85	-0.5
147,134	-		SO_A0158	0.85	+0.4
147,134	-		SO_A0158	0.85	-0.2
147,134	-		SO_A0158	0.85	-0.8
147,166	+				-3.2
147,166	+				-1.3
147,166	+				+1.8
147,166	+				+1.4
147,166	+				+1.6
147,166	+				+2.0
147,230	-				+0.7
147,343	+				-0.0
147,343	+				+0.9
147,344	+				+1.3
147,344	+				-1.2
147,350	-				+1.9
147,352	-				-1.1
147,352	-				-1.6
147,377	+				-0.3
147,396	-				+2.4
147,400	+				+0.0
147,400	+				+0.2
147,412	+				+1.8
147,452	-				+0.0
147,459	+				-0.8
147,459	+				-0.3
147,459	+				+0.9
147,459	+				+0.5
147,467	-				+0.7
147,467	-				+1.4
147,467	-				-0.8
147,467	-				+0.7
147,498	-				+1.5
147,505	+				-0.2
147,506	+				+2.2
147,509	+				+1.2
147,509	+				-0.1
147,513	-				+1.1
147,514	+				-0.0
147,516	-				-0.2
147,517	-				-1.2
147,530	+		SOA0159	0.12	+0.6
147,530	+		SOA0159	0.12	-1.5
147,530	+		SOA0159	0.12	+1.2
147,530	+		SOA0159	0.12	-3.1
147,532	-		SOA0159	0.12	+0.1
147,538	-		SOA0159	0.14	-1.5
147,541	+		SOA0159	0.15	+0.1
147,541	+		SOA0159	0.15	-1.8
147,549	-				+2.2
147,554	-		SOA0159	0.19	-0.8
147,554	-		SOA0159	0.19	+1.0
147,555	+		SOA0159	0.19	+1.0
147,565	+		SOA0159	0.22	-0.1
147,565	+		SOA0159	0.22	+0.7
147,565	+		SOA0159	0.22	-0.1
147,565	+		SOA0159	0.22	-0.8
147,565	+		SOA0159	0.22	-1.0
147,565	+		SOA0159	0.22	+1.0
147,565	+		SOA0159	0.22	+2.4
147,565	+		SOA0159	0.22	+2.2
147,573	-		SOA0159	0.25	-1.6
147,573	-		SOA0159	0.25	-2.1
147,573	-		SOA0159	0.25	-0.8
147,583	+		SOA0159	0.28	+0.8
147,583	+		SOA0159	0.28	-0.1
147,583	+		SOA0159	0.28	+1.7
147,588	+		SOA0159	0.29	-2.1
147,591	-		SOA0159	0.30	-1.1
147,591	-		SOA0159	0.30	-0.3
147,591	-		SOA0159	0.30	+0.2
147,591	-		SOA0159	0.30	+1.0
147,593	+		SOA0159	0.31	+0.9
147,605	-		SOA0159	0.35	-0.7
147,631	+		SOA0159	0.43	+2.0
147,631	+		SOA0159	0.43	+0.5
147,631	+		SOA0159	0.43	+0.8
147,634	-		SOA0159	0.43	+0.7
147,634	-		SOA0159	0.43	+1.1
147,636	+		SOA0159	0.44	+1.4
147,666	-		SOA0159	0.53	-0.8
147,727	+		SOA0159	0.72	-1.9
147,746	-		SOA0159	0.78	-0.7
147,763	-		SOA0159	0.83	-3.2
147,764	-		SOA0159	0.83	-2.2
147,771	+		SOA0159	0.85	+0.7
147,771	+		SOA0159	0.85	-2.9
147,777	+		SOA0159	0.87	+0.9
147,777	+		SOA0159	0.87	+0.4
147,777	+		SOA0159	0.87	+0.2
147,777	+		SOA0159	0.87	+2.8
147,777	+		SOA0159	0.87	+2.2
147,777	+		SOA0159	0.87	-1.9
147,777	+		SOA0159	0.87	-0.6
147,777	+		SOA0159	0.87	-1.3
147,777	+		SOA0159	0.87	-1.9
147,777	+		SOA0159	0.87	-0.8
147,777	+		SOA0159	0.87	-1.1
147,779	-		SOA0159	0.88	-1.3
147,779	-		SOA0159	0.88	+0.2
147,785	-		SOA0159	0.90	-1.1
147,785	-		SOA0159	0.90	+1.0
147,785	-		SOA0159	0.90	-0.3
147,790	+				-2.6
147,790	+				-1.2
147,793	+				-0.9
147,820	+				+0.8
147,820	+				-0.1
147,828	-				+3.6
147,850	+				+1.8
147,850	+				-3.3
147,850	+				-0.8
147,858	-				+5.8
147,858	-				+0.3
147,858	-				-0.8
147,858	-				-1.2
147,858	-				-0.6
147,863	+				-1.8
147,863	+				+0.8
147,863	+				+1.2
147,863	+				-1.3
147,871	-				-1.2
147,871	-				-0.8
147,922	-				-0.0
148,027	-				+1.9
148,027	-				-0.4
148,064	+				-0.1
148,073	-				-3.2
148,129	+				-0.8
148,129	+				+0.6
148,130	+				-1.3
148,130	+				+2.2
148,130	+				-0.3
148,138	-				-1.6
148,138	-				-0.5
148,138	-				+1.5
148,138	-				+0.1
148,138	-				-0.6
148,138	-				-2.2
148,153	+		SOA0160	0.11	-1.2
148,161	+		SOA0160	0.12	-1.1
148,161	+		SOA0160	0.12	-0.3
148,161	+		SOA0160	0.12	-0.3
148,161	-		SOA0160	0.12	-3.2
148,161	-		SOA0160	0.12	-0.3
148,161	-		SOA0160	0.12	+1.0
148,164	-		SOA0160	0.13	+0.2
148,164	-		SOA0160	0.13	+1.0
148,167	+		SOA0160	0.13	-1.9
148,167	+		SOA0160	0.13	+0.0
148,167	+		SOA0160	0.13	+0.8
148,167	+		SOA0160	0.13	-0.6
148,167	+		SOA0160	0.13	+0.9
148,167	+		SOA0160	0.13	-2.8
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	-1.7
148,167	+		SOA0160	0.13	-1.7
148,167	+		SOA0160	0.13	+0.3
148,167	+		SOA0160	0.13	+3.6
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	+0.1
148,167	+		SOA0160	0.13	+0.5
148,167	+		SOA0160	0.13	+0.9
148,167	+		SOA0160	0.13	-2.5
148,167	+		SOA0160	0.13	+0.9
148,167	+		SOA0160	0.13	+1.2
148,167	+		SOA0160	0.13	-0.8
148,167	+		SOA0160	0.13	+1.0
148,167	+		SOA0160	0.13	-1.3
148,167	+		SOA0160	0.13	-1.8
148,167	+		SOA0160	0.13	+1.5
148,167	+		SOA0160	0.13	+0.7
148,167	+		SOA0160	0.13	+0.8
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	-0.2
148,167	+		SOA0160	0.13	-1.0
148,167	+		SOA0160	0.13	+1.1
148,167	+		SOA0160	0.13	-1.3
148,167	+		SOA0160	0.13	+1.2
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	-0.3
148,167	+		SOA0160	0.13	-2.2
148,167	+		SOA0160	0.13	-0.6
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	-1.8
148,167	+		SOA0160	0.13	+3.5
148,167	+		SOA0160	0.13	-0.6
148,167	+		SOA0160	0.13	-0.1
148,167	+		SOA0160	0.13	+0.2
148,167	+		SOA0160	0.13	+0.3
148,167	+		SOA0160	0.13	-0.2
148,167	+		SOA0160	0.13	-0.6
148,167	+		SOA0160	0.13	+0.6
148,167	+		SOA0160	0.13	-0.8
148,167	+		SOA0160	0.13	-1.1
148,167	+		SOA0160	0.13	+0.4
148,167	+		SOA0160	0.13	+0.9
148,167	+		SOA0160	0.13	+0.5
148,167	+		SOA0160	0.13	-0.2
148,167	+		SOA0160	0.13	-0.2
148,167	+		SOA0160	0.13	-0.0
148,167	+		SOA0160	0.13	-1.6
148,167	+		SOA0160	0.13	+0.5
148,167	+		SOA0160	0.13	-3.1
148,167	+		SOA0160	0.13	+0.3
148,169	-		SOA0160	0.13	-2.3
148,169	-		SOA0160	0.13	-0.7
148,169	-		SOA0160	0.13	-2.8
148,169	-		SOA0160	0.13	+0.5
148,174	-		SOA0160	0.14	+1.0
148,175	-		SOA0160	0.14	+1.8
148,175	-		SOA0160	0.14	-3.7
148,175	-		SOA0160	0.14	+0.8
148,175	-		SOA0160	0.14	-1.8
148,175	-		SOA0160	0.14	-1.6
148,175	-		SOA0160	0.14	+0.2
148,175	-		SOA0160	0.14	+0.1
148,175	-		SOA0160	0.14	+0.6
148,175	-		SOA0160	0.14	-0.3
148,175	-		SOA0160	0.14	-0.6
148,175	-		SOA0160	0.14	+0.7
148,175	-		SOA0160	0.14	-1.1
148,175	-		SOA0160	0.14	+1.2
148,175	-		SOA0160	0.14	-2.1
148,175	-		SOA0160	0.14	-0.8
148,175	-		SOA0160	0.14	+0.5
148,175	-		SOA0160	0.14	-2.1
148,175	-		SOA0160	0.14	-1.2
148,175	-		SOA0160	0.14	+0.8
148,175	-		SOA0160	0.14	-0.4
148,175	-		SOA0160	0.14	+0.1
148,175	-		SOA0160	0.14	-0.8
148,175	-		SOA0160	0.14	-1.2
148,175	-		SOA0160	0.14	-0.1
148,175	-		SOA0160	0.14	-1.0
148,175	-		SOA0160	0.14	-0.0
148,175	-		SOA0160	0.14	-1.2
148,175	-		SOA0160	0.14	-1.5
148,175	-		SOA0160	0.14	-0.8
148,175	-		SOA0160	0.14	-0.1
148,175	-		SOA0160	0.14	+0.1
148,175	-		SOA0160	0.14	-1.5
148,175	-		SOA0160	0.14	-0.8
148,175	-		SOA0160	0.14	-2.3
148,175	-		SOA0160	0.14	-0.9
148,175	-		SOA0160	0.14	+1.7
148,175	-		SOA0160	0.14	-1.0
148,175	-		SOA0160	0.14	+0.4
148,175	-		SOA0160	0.14	-1.3
148,175	-		SOA0160	0.14	-2.3
148,175	-		SOA0160	0.14	+0.0
148,175	-		SOA0160	0.14	-0.5
148,175	-		SOA0160	0.14	-2.5
148,175	-		SOA0160	0.14	-1.1
148,175	-		SOA0160	0.14	-3.2
148,175	-		SOA0160	0.14	+0.9
148,175	-		SOA0160	0.14	+2.3
148,175	-		SOA0160	0.14	-0.4
148,175	-		SOA0160	0.14	+1.1
148,175	-		SOA0160	0.14	-1.3
148,175	-		SOA0160	0.14	+1.0
148,175	-		SOA0160	0.14	-2.6
148,175	-		SOA0160	0.14	-1.2
148,175	-		SOA0160	0.14	+0.2
148,175	-		SOA0160	0.14	+0.3
148,175	-		SOA0160	0.14	-0.8
148,175	-		SOA0160	0.14	+1.7
148,175	-		SOA0160	0.14	-0.2
148,175	-		SOA0160	0.14	+1.3
148,175	-		SOA0160	0.14	+0.1
148,175	-		SOA0160	0.14	-0.6
148,175	-		SOA0160	0.14	-0.3
148,175	-				+1.2
148,175	-		SOA0160	0.14	-0.3
148,175	-		SOA0160	0.14	+0.4
148,185	+		SOA0160	0.15	-1.4
148,185	+		SOA0160	0.15	-1.5
148,185	+		SOA0160	0.15	-1.6
148,193	-		SOA0160	0.16	-0.1
148,193	-		SOA0160	0.16	-1.6
148,195	+		SOA0160	0.16	-0.8
148,195	+		SOA0160	0.16	-1.9
148,200	+		SOA0160	0.17	-0.1
148,200	+		SOA0160	0.17	+0.0
148,200	+		SOA0160	0.17	-0.4
148,200	+		SOA0160	0.17	-1.1
148,200	+		SOA0160	0.17	-2.7
148,203	-		SOA0160	0.17	-1.3
148,208	-		SOA0160	0.18	+2.2
148,208	-		SOA0160	0.18	+1.9
148,208	-		SOA0160	0.18	+0.8
148,208	-		SOA0160	0.18	-0.7
148,208	-		SOA0160	0.18	+0.5
148,208	-		SOA0160	0.18	-2.5
148,243	-		SOA0160	0.22	-1.3
148,259	+		SOA0160	0.24	-1.4
148,300	+		SOA0160	0.29	-1.6
148,335	+		SOA0160	0.33	+0.4
148,388	+		SOA0160	0.39	-0.8
148,398	+		SOA0160	0.40	+1.0
148,407	+		SOA0160	0.42	-0.3
148,408	+		SOA0160	0.42	-0.7
148,411	-		SOA0160	0.42	-1.3
148,413	+		SOA0160	0.42	+0.9
148,413	+		SOA0160	0.42	+1.0
148,416	-		SOA0160	0.43	-1.8
148,421	-		SOA0160	0.43	-0.7
148,421	-		SOA0160	0.43	-2.2
148,468	-		SOA0160	0.49	-1.0
148,474	+		SOA0160	0.50	+0.9
148,527	+		SOA0160	0.56	+1.0
148,586	+		SOA0160	0.63	-1.5
148,603	+		SOA0160	0.65	-0.5
148,690	-		SOA0160	0.75	+0.0
148,695	-		SOA0160	0.76	+0.9
148,730	+		SOA0160	0.80	-2.5
148,738	-		SOA0160	0.81	+0.5
148,748	+		SOA0160	0.82	+0.2
148,748	+		SOA0160	0.82	-0.3
148,748	+		SOA0160	0.82	+0.9
148,748	+		SOA0160	0.82	+0.5
148,755	+		SOA0160	0.83	+0.0
148,836	+				+0.2
148,836	+				+0.2
148,844	-				-1.4
148,908	+				-1.3
148,921	+				-1.5
148,925	-				-0.9
148,929	-				-1.1
148,929	-				+4.3
148,929	-				-1.8
148,931	+				-1.1
148,932	+				+0.2
148,940	-				-0.1
148,940	-				+0.4
148,940	-				+1.0
148,947	+				-0.0
148,950	-				+2.9
148,950	-				+1.5
148,964	+				-1.2
148,980	+				-2.1
148,982	+				+0.2
149,015	+				-0.3
149,015	+				+2.9
149,016	+				-0.9
149,024	-				+0.8
149,024	-				-0.8
149,046	+				+0.2
149,046	+				+1.2
149,046	+				-1.0
149,046	+				+0.2
149,046	+				+1.1
149,046	+				-0.8
149,046	+				+1.2
149,046	+				+0.8
149,054	-				+1.2
149,054	-				-0.7
149,054	-				+1.0
149,054	-				-0.8
149,054	-				+0.6
149,054	-				-0.1
149,054	-				+0.6
149,054	-				-1.0
149,054	-				-1.9
149,054	-				+1.1
149,054	-				-0.1
149,056	+				+0.0
149,056	+				+0.7
149,056	+				-0.9
149,056	+				+0.5
149,056	+				+0.8
149,056	+				+2.6
149,056	+				-0.6
149,056	+				+0.7
149,056	+				+0.5
149,056	+				-0.3
149,056	+				+0.2
149,056	+				+1.0
149,056	+				+1.0
149,056	+				+0.3
149,064	-				+0.9
149,064	-				+1.2
149,064	-				-0.2
149,064	-				-0.1
149,064	-				-0.3
149,064	-				-1.1
149,064	-				-0.3
149,064	-				-1.6
149,064	-				-2.2
149,064	-				+0.6
149,064	-				+1.1
149,064	-				+0.6
149,064	-				+0.8
149,072	-				+0.4
149,072	-				-0.8
149,072	-				+0.6
149,072	-				-0.3
149,072	-				+1.6
149,092	+				+1.5
149,144	+		SOA0161	0.14	-0.1
149,144	+		SOA0161	0.14	+0.9
149,144	+		SOA0161	0.14	-0.3
149,152	-		SOA0161	0.15	+0.3
149,174	-		SOA0161	0.17	-1.8
149,197	+		SOA0161	0.19	+0.6
149,216	+		SOA0161	0.20	+1.2
149,216	+		SOA0161	0.20	+2.1
149,216	+		SOA0161	0.20	-0.0
149,224	-		SOA0161	0.21	-1.9
149,224	-		SOA0161	0.21	+1.0
149,224	-		SOA0161	0.21	+0.2
149,245	+		SOA0161	0.23	+2.8
149,253	-		SOA0161	0.24	+0.2
149,256	+		SOA0161	0.24	+1.8
149,263	+		SOA0161	0.25	+0.7
149,263	-		SOA0161	0.25	+0.4
149,281	+		SOA0161	0.26	-0.2
149,284	-		SOA0161	0.26	+0.7
149,286	-		SOA0161	0.27	-0.9
149,288	+		SOA0161	0.27	-1.8
149,288	+		SOA0161	0.27	-0.1
149,295	+		SOA0161	0.27	-1.9
149,295	+		SOA0161	0.27	-0.1
149,303	-		SOA0161	0.28	+1.4
149,303	-		SOA0161	0.28	+0.4
149,303	-		SOA0161	0.28	-1.3
149,303	-		SOA0161	0.28	-2.8
149,303	-		SOA0161	0.28	-0.3
149,303	-		SOA0161	0.28	-0.0
149,320	-		SOA0161	0.30	+0.7
149,347	+		SOA0161	0.32	-0.8
149,383	+		SOA0161	0.35	-1.5
149,433	-		SOA0161	0.40	-0.1
149,454	+		SOA0161	0.41	+2.1
149,511	-		SOA0161	0.47	-1.9
149,511	-		SOA0161	0.47	-2.5
149,516	-		SOA0161	0.47	+2.6
149,533	+		SOA0161	0.48	+0.6
149,533	+		SOA0161	0.48	+2.2
149,533	+		SOA0161	0.48	-0.8
149,541	-		SOA0161	0.49	-0.3
149,552	-		SOA0161	0.50	+0.4
149,592	+		SOA0161	0.54	+0.5
149,613	+		SOA0161	0.56	-1.9
149,659	-		SOA0161	0.60	-2.1
149,665	-		SOA0161	0.60	+0.8
149,699	-		SOA0161	0.63	-1.6
149,754	+		SOA0161	0.68	-0.1
149,827	+		SOA0161	0.74	+0.3
149,827	+		SOA0161	0.74	-2.1
149,830	+		SOA0161	0.75	+1.0
149,832	+		SOA0161	0.75	-0.0
149,832	+		SOA0161	0.75	+1.1
149,832	+		SOA0161	0.75	+1.3
149,832	+		SOA0161	0.75	+0.0
149,832	+		SOA0161	0.75	+1.3
149,832	+		SOA0161	0.75	-2.3
149,832	+		SOA0161	0.75	+1.1
149,840	-		SOA0161	0.76	+0.1
149,873	+		SOA0161	0.79	+0.5
149,884	+		SOA0161	0.79	+0.6
149,886	+		SOA0161	0.80	+0.9
149,892	-		SOA0161	0.80	+0.5