Strain Fitness in Shewanella oneidensis MR-1 around SOA0100

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
78,663	+		SOA0099	0.55	-0.1
78,671	-		SOA0099	0.55	+0.1
78,671	-		SOA0099	0.55	-0.0
78,671	-		SOA0099	0.55	+1.4
78,761	-		SOA0099	0.60	+1.2
78,767	+		SOA0099	0.61	-1.6
78,775	+		SOA0099	0.61	-0.1
78,787	+		SOA0099	0.62	-2.3
78,790	-		SOA0099	0.62	+1.8
78,792	+		SOA0099	0.62	+0.2
78,792	+		SOA0099	0.62	+0.8
78,793	+		SOA0099	0.62	-0.3
78,793	+		SOA0099	0.62	-2.6
78,795	-		SOA0099	0.62	+1.0
78,795	-		SOA0099	0.62	+1.4
78,801	-		SOA0099	0.63	-1.4
78,867	-		SOA0099	0.67	+0.2
78,918	+		SOA0099	0.69	+0.1
78,918	+		SOA0099	0.69	+0.8
78,928	+		SOA0099	0.70	+1.0
78,941	+		SOA0099	0.71	+0.7
78,949	-		SOA0099	0.71	+1.2
78,949	-		SOA0099	0.71	+1.0
78,956	-		SOA0099	0.72	+0.2
78,972	-		SOA0099	0.73	+1.4
79,005	+		SOA0099	0.75	+1.2
79,005	+		SOA0099	0.75	-0.5
79,005	+		SOA0099	0.75	+0.1
79,005	+		SOA0099	0.75	-2.2
79,005	+		SOA0099	0.75	-1.8
79,112	+		SOA0099	0.81	-2.3
79,112	+		SOA0099	0.81	+0.2
79,120	-		SOA0099	0.81	+1.0
79,120	-		SOA0099	0.81	+0.3
79,147	+		SOA0099	0.83	+1.8
79,194	-		SOA0099	0.85	+0.5
79,251	+		SOA0099	0.89	+0.1
79,251	+		SOA0099	0.89	+0.9
79,287	-				+3.2
79,361	+				+0.4
79,391	+				-1.1
79,399	+				-0.8
79,399	-				-0.2
79,399	-				-0.4
79,485	+				+2.1
79,485	+				-0.5
79,485	+				-2.7
79,485	+				+0.6
79,485	+				+0.0
79,485	+				-1.7
79,485	+				-0.9
79,485	+				+0.6
79,485	+				+1.1
79,485	+				+1.5
79,485	+				+1.8
79,485	+				-0.5
79,485	+				-0.2
79,485	+				+0.2
79,485	+				-2.3
79,485	+				+1.7
79,485	+				-0.9
79,485	+				-0.8
79,485	+				-0.1
79,485	+				-1.5
79,485	+				+0.3
79,485	+				-0.4
79,485	+				+0.9
79,485	+				-1.8
79,485	+				-0.2
79,485	+				+0.8
79,485	+				-1.3
79,485	+				-1.8
79,485	+				+1.1
79,485	+				+0.2
79,493	-				-0.4
79,493	-				-1.2
79,493	-				-0.2
79,493	-				+0.7
79,493	-				-1.6
79,493	-				-2.3
79,493	-				-2.7
79,493	-				-2.2
79,493	-				-0.3
79,493	-				-2.2
79,493	-				+1.2
79,493	-				+0.5
79,493	-				+1.4
79,493	-				-0.3
79,493	-				+2.6
79,493	-				+1.1
79,493	-				+1.2
79,493	-				+3.1
79,493	-				-0.1
79,493	-				+0.3
79,493	-				+2.9
79,493	-				-0.8
79,493	-				+0.5
79,493	-				+1.5
79,519	-				-0.0
79,557	+				-0.3
79,604	+				+2.1
79,604	+				+1.2
79,637	+				+0.0
79,661	-				+0.0
79,668	+				-0.1
79,668	+				+1.8
79,676	-				+1.4
79,691	+				-0.3
79,709	-				+0.8
79,709	-				+2.6
79,756	-				+1.2
79,910	-		SOA0100	0.14	+1.4
79,926	-		SOA0100	0.15	+1.2
79,970	-		SOA0100	0.17	-0.3
79,970	-		SOA0100	0.17	-0.2
79,970	-		SOA0100	0.17	-0.1
79,989	+		SOA0100	0.18	+2.1
79,995	+		SOA0100	0.19	-0.8
79,995	-		SOA0100	0.19	+0.8
79,997	-		SOA0100	0.19	+2.2
79,997	-		SOA0100	0.19	-0.2
80,032	+		SOA0100	0.21	-2.6
80,047	+		SOA0100	0.22	+1.5
80,070	+		SOA0100	0.23	-1.1
80,072	+		SOA0100	0.23	-0.9
80,078	-		SOA0100	0.23	-1.4
80,078	-		SOA0100	0.23	+1.6
80,078	-		SOA0100	0.23	+2.8
80,080	-		SOA0100	0.23	+1.0
80,083	+		SOA0100	0.24	-2.2
80,091	-				+1.2
80,091	-		SOA0100	0.24	-0.1
80,108	-		SOA0100	0.25	-1.0
80,110	-		SOA0100	0.25	-0.5
80,139	+		SOA0100	0.27	+1.5
80,173	+		SOA0100	0.28	-0.2
80,177	+		SOA0100	0.29	+1.0
80,178	+		SOA0100	0.29	-1.8
80,181	-		SOA0100	0.29	+0.4
80,207	+		SOA0100	0.30	+0.8
80,221	+		SOA0100	0.31	-0.2
80,229	-		SOA0100	0.32	+1.0
80,229	-		SOA0100	0.32	-1.0
80,312	+		SOA0100	0.36	+0.6
80,320	+		SOA0100	0.37	-1.3
80,354	+		SOA0100	0.38	+1.4
80,362	-		SOA0100	0.39	+1.1
80,377	+		SOA0100	0.40	+0.3
80,385	-		SOA0100	0.40	-1.5
80,430	+		SOA0100	0.43	+2.0
80,430	+		SOA0100	0.43	+0.3
80,497	+		SOA0100	0.46	+0.8
80,502	+		SOA0100	0.47	+1.9
80,505	-		SOA0100	0.47	+2.0
80,505	-		SOA0100	0.47	+0.2
80,529	-		SOA0100	0.48	+0.9
80,554	+		SOA0100	0.49	-0.3
80,564	-		SOA0100	0.50	-1.8
80,651	+		SOA0100	0.55	+0.4
80,696	-		SOA0100	0.57	+1.1
80,710	+		SOA0100	0.58	-1.3
80,715	+		SOA0100	0.58	+0.6
80,717	-		SOA0100	0.58	-0.3
80,722	-		SOA0100	0.59	+0.5
80,733	-		SOA0100	0.59	+2.6
80,798	-		SOA0100	0.63	+1.2
80,881	+		SOA0100	0.67	-1.2
80,882	-		SOA0100	0.68	-1.6
80,889	-		SOA0100	0.68	+1.9
80,902	-		SOA0100	0.69	-0.2
80,909	-		SOA0100	0.69	+0.1
80,910	+		SOA0100	0.69	+0.4
80,933	-		SOA0100	0.70	-0.6
80,947	+		SOA0100	0.71	-1.5
80,978	-		SOA0100	0.73	+0.8
81,007	+		SOA0100	0.74	-0.7
81,034	-		SOA0100	0.76	+1.4
81,041	+		SOA0100	0.76	-1.8
81,105	+		SOA0100	0.80	+0.4
81,175	-		SOA0100	0.84	+1.8
81,177	-		SOA0100	0.84	+1.5
81,181	+		SOA0100	0.84	+1.4
81,189	-		SOA0100	0.84	+1.0
81,189	-		SOA0100	0.84	-0.2
81,191	-		SOA0100	0.85	+0.9
81,234	-		SOA0100	0.87	+0.2
81,248	+		SOA0100	0.88	-0.1
81,256	-		SOA0100	0.88	+0.1
81,263	+		SOA0100	0.89	+1.1
81,278	+		SOA0100	0.89	-0.5
81,286	+		SOA0100	0.90	-1.6
81,286	+		SOA0100	0.90	+0.5
81,294	-				-1.6
81,294	-				+1.0
81,294	-				+0.8
81,294	-				+0.6
81,296	+				+0.9
81,334	+				-0.6
81,335	-				+1.5
81,336	-				-0.8
81,407	+				-0.3
81,432	-				-0.2
81,442	-				-0.1
81,442	-				-1.6
81,442	-				-3.3
81,442	-				+0.9
81,442	-				+0.9
81,442	-				+0.2
81,442	-				+0.8
81,495	+				-0.8
81,512	+				+2.8
81,512	+				-1.9
81,512	+				+1.8
81,512	+				+1.6
81,538	-				+1.3
81,602	+				-0.5
81,618	-				-1.6
81,618	-				+1.0
81,643	+				+0.8
81,643	+				-0.9
81,643	+				+1.1
81,643	+				+1.6
81,643	+				+0.7
81,643	+				+0.4
81,643	+				-0.3
81,643	+				-1.3
81,643	+				+0.8
81,648	+				-1.6
81,651	-				-1.6
81,651	-				-0.6
81,651	-				-1.6
81,651	-				-0.1
81,651	-				+0.0
81,677	-				-0.8