Strain Fitness in Shewanella oneidensis MR-1 around SO4385

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
4,579,337	-				-0.5
4,579,337	-				+0.2
4,579,343	+				-0.1
4,579,346	-				+0.6
4,579,351	-				-0.2
4,579,364	+				+0.1
4,579,372	-				-2.1
4,579,374	+		SO4384	0.10	-1.9
4,579,479	+		SO4384	0.24	+0.0
4,579,487	-		SO4384	0.25	-1.1
4,579,560	+		SO4384	0.35	+0.7
4,579,560	+		SO4384	0.35	+1.2
4,579,568	-		SO4384	0.36	-2.1
4,579,568	-		SO4384	0.36	+0.7
4,579,581	+		SO4384	0.38	+1.1
4,579,581	+		SO4384	0.38	-1.7
4,579,703	-		SO4384	0.54	-0.1
4,579,852	+		SO4384	0.74	-1.3
4,579,860	-		SO4384	0.75	-1.7
4,579,874	+		SO4384	0.77	-2.4
4,579,882	-		SO4384	0.78	+1.6
4,579,885	-		SO4384	0.79	-0.1
4,579,893	-		SO4384	0.80	-0.8
4,579,909	+		SO4384	0.82	+0.6
4,579,919	+		SO4384	0.83	+0.1
4,579,919	+		SO4384	0.83	-2.5
4,579,927	-		SO4384	0.84	-2.8
4,579,927	-		SO4384	0.84	+2.6
4,579,927	-		SO4384	0.84	+0.4
4,579,927	-		SO4384	0.84	-1.7
4,579,942	+		SO4384	0.86	+0.5
4,579,962	-		SO4384	0.89	-0.0
4,579,973	-				+0.8
4,579,990	-				-0.0
4,579,990	-				+0.6
4,580,013	+				-0.8
4,580,013	+				+0.8
4,580,021	-				+2.5
4,580,021	-				-1.1
4,580,036	+				+1.3
4,580,065	-				-0.7
4,580,076	+				+0.2
4,580,107	+				-0.5
4,580,130	-				+0.3
4,580,132	+				-0.3
4,580,132	-				+0.7
4,580,157	-				-1.5
4,580,204	+				-0.3
4,580,213	-				+0.2
4,580,213	-				+0.0
4,580,226	+				+0.9
4,580,234	-				+0.9
4,580,234	-				+0.8
4,580,306	+				-0.5
4,580,313	+				-2.3
4,580,313	+				-0.4
4,580,313	+				+1.5
4,580,321	-				+0.1
4,580,326	+				-2.9
4,580,326	+				-1.0
4,580,326	-				-0.6
4,580,334	-				+0.7
4,580,345	+				-0.5
4,580,362	-				-0.0
4,580,362	-				+1.2
4,580,364	+				+1.3
4,580,364	+				+1.1
4,580,364	+				-1.0
4,580,364	+				+0.7
4,580,364	+				+1.4
4,580,364	+				-0.9
4,580,364	+				+0.1
4,580,369	+				+1.8
4,580,370	+				+0.2
4,580,370	+				-0.5
4,580,372	-				-0.1
4,580,372	-				+0.4
4,580,372	-				-1.6
4,580,372	-				+1.1
4,580,372	-				+2.5
4,580,372	-				-2.9
4,580,376	+				+0.5
4,580,376	+				+1.0
4,580,376	+				-1.3
4,580,376	+				-2.1
4,580,376	+				-1.1
4,580,376	+				+0.5
4,580,376	+				+0.6
4,580,383	+				+0.5
4,580,383	+				-0.3
4,580,383	+				-0.4
4,580,383	+				+0.3
4,580,383	+				-0.5
4,580,383	+				+0.8
4,580,383	+				-0.2
4,580,383	+				+0.9
4,580,383	+				+1.5
4,580,383	+				+0.6
4,580,383	+				+0.7
4,580,383	+				-1.0
4,580,383	+				-0.3
4,580,383	+				+1.0
4,580,383	+				-0.5
4,580,383	+				-1.6
4,580,383	+				+0.1
4,580,383	+				+1.6
4,580,383	+				+0.3
4,580,383	-				-0.0
4,580,384	-				-0.4
4,580,384	-				-1.9
4,580,384	-				-1.1
4,580,384	-				+0.1
4,580,391	-				-2.6
4,580,391	-				-1.7
4,580,391	-				+0.2
4,580,391	-				+1.1
4,580,391	-				+1.7
4,580,391	-				+2.1
4,580,391	-				+0.7
4,580,391	-				+1.1
4,580,391	-				+1.5
4,580,391	-				-0.8
4,580,391	-				-0.5
4,580,391	-				-0.1
4,580,391	-				-0.1
4,580,391	-				-2.9
4,580,391	-				-1.9
4,580,391	-				-1.4
4,580,391	-				-0.5
4,580,391	-				+0.5
4,580,391	-				-0.6
4,580,403	-				+0.2
4,580,404	-				-0.1
4,580,404	-				-2.3
4,580,499	+		SO4385	0.13	-0.1
4,580,507	-		SO4385	0.14	+4.5
4,580,535	+		SO4385	0.16	+0.2
4,580,535	+		SO4385	0.16	+1.8
4,580,535	+		SO4385	0.16	-0.6
4,580,535	+		SO4385	0.16	-1.6
4,580,535	+		SO4385	0.16	+0.5
4,580,539	+		SO4385	0.16	-2.2
4,580,543	-		SO4385	0.16	-1.0
4,580,543	-		SO4385	0.16	-1.5
4,580,543	-		SO4385	0.16	-2.5
4,580,545	+		SO4385	0.17	-1.0
4,580,546	+		SO4385	0.17	-0.6
4,580,554	-		SO4385	0.17	+1.3
4,580,554	-		SO4385	0.17	+1.6
4,580,554	-		SO4385	0.17	+0.0
4,580,554	-		SO4385	0.17	-3.0
4,580,557	+		SO4385	0.17	-1.5
4,580,561	+		SO4385	0.18	-0.5
4,580,561	+		SO4385	0.18	+0.3
4,580,561	+		SO4385	0.18	-1.7
4,580,561	+		SO4385	0.18	+1.1
4,580,561	+		SO4385	0.18	-3.5
4,580,561	+		SO4385	0.18	+2.5
4,580,561	+		SO4385	0.18	+0.3
4,580,561	+		SO4385	0.18	-2.5
4,580,561	+		SO4385	0.18	-0.5
4,580,561	+		SO4385	0.18	-1.2
4,580,561	+		SO4385	0.18	-1.5
4,580,561	+		SO4385	0.18	+0.1
4,580,561	+		SO4385	0.18	-3.4
4,580,561	+		SO4385	0.18	-1.5
4,580,561	+		SO4385	0.18	+0.2
4,580,562	+		SO4385	0.18	-0.0
4,580,565	-		SO4385	0.18	-0.0
4,580,565	-		SO4385	0.18	-1.2
4,580,565	-		SO4385	0.18	-2.2
4,580,567	-		SO4385	0.18	+1.7
4,580,569	-		SO4385	0.18	+2.9
4,580,569	-		SO4385	0.18	+0.8
4,580,569	-		SO4385	0.18	+1.3
4,580,569	-		SO4385	0.18	-1.5
4,580,569	-		SO4385	0.18	+0.3
4,580,569	-		SO4385	0.18	+3.3
4,580,569	-		SO4385	0.18	+1.9
4,580,569	-		SO4385	0.18	+1.3
4,580,569	-		SO4385	0.18	-0.3
4,580,569	-		SO4385	0.18	+1.7
4,580,569	-		SO4385	0.18	-0.3
4,580,569	-		SO4385	0.18	+1.0
4,580,569	-		SO4385	0.18	-2.2
4,580,569	-		SO4385	0.18	+0.7
4,580,603	+		SO4385	0.21	-1.7
4,580,623	+		SO4385	0.22	+1.6
4,580,623	+		SO4385	0.22	-1.5
4,580,631	-		SO4385	0.23	-2.1
4,580,644	-		SO4385	0.24	-1.7
4,580,655	-		SO4385	0.25	-2.7
4,580,662	+		SO4385	0.25	+1.4
4,580,670	-		SO4385	0.26	-0.6
4,580,675	-		SO4385	0.26	+0.2
4,580,724	-		SO4385	0.30	+0.5
4,580,737	+		SO4385	0.31	+0.1
4,580,751	+		SO4385	0.32	+1.4
4,580,754	+		SO4385	0.32	+1.4
4,580,756	+		SO4385	0.32	+0.3
4,580,759	-		SO4385	0.32	+0.1
4,580,759	-		SO4385	0.32	+1.7
4,580,759	-		SO4385	0.32	+1.4
4,580,762	+		SO4385	0.33	+2.3
4,580,762	+		SO4385	0.33	-2.1
4,580,762	+		SO4385	0.33	+0.1
4,580,762	-		SO4385	0.33	+1.4
4,580,762	-		SO4385	0.33	-0.3
4,580,762	-		SO4385	0.33	-0.2
4,580,762	-		SO4385	0.33	+1.4
4,580,764	+		SO4385	0.33	-3.8
4,580,764	+		SO4385	0.33	+0.3
4,580,764	+		SO4385	0.33	+2.1
4,580,764	+		SO4385	0.33	-0.5
4,580,764	+		SO4385	0.33	+0.1
4,580,764	+		SO4385	0.33	-3.1
4,580,764	+		SO4385	0.33	+0.2
4,580,764	+		SO4385	0.33	-1.2
4,580,764	+		SO4385	0.33	+0.5
4,580,764	+		SO4385	0.33	+0.6
4,580,764	+		SO4385	0.33	-1.2
4,580,764	+		SO4385	0.33	+1.0
4,580,764	+		SO4385	0.33	-2.1
4,580,764	+		SO4385	0.33	-0.7
4,580,764	+		SO4385	0.33	-0.9
4,580,764	+		SO4385	0.33	+0.7
4,580,764	+		SO4385	0.33	-2.1
4,580,764	+		SO4385	0.33	+0.7
4,580,764	+		SO4385	0.33	+1.3
4,580,764	+		SO4385	0.33	+0.5
4,580,764	+		SO4385	0.33	+1.1
4,580,764	+		SO4385	0.33	-0.0
4,580,764	+		SO4385	0.33	+0.8
4,580,764	+		SO4385	0.33	-2.5
4,580,764	+		SO4385	0.33	-0.9
4,580,764	+		SO4385	0.33	-1.9
4,580,764	+		SO4385	0.33	-2.0
4,580,764	+		SO4385	0.33	+0.5
4,580,764	+		SO4385	0.33	+2.5
4,580,764	+		SO4385	0.33	+0.1
4,580,764	+		SO4385	0.33	+0.2
4,580,764	+		SO4385	0.33	+0.9
4,580,764	+		SO4385	0.33	-0.6
4,580,764	+		SO4385	0.33	+0.5
4,580,764	+		SO4385	0.33	-0.1
4,580,764	+		SO4385	0.33	-1.9
4,580,764	+		SO4385	0.33	-0.6
4,580,764	+		SO4385	0.33	+0.2
4,580,764	+		SO4385	0.33	-3.1
4,580,764	+		SO4385	0.33	-1.7
4,580,764	+		SO4385	0.33	+0.5
4,580,764	+		SO4385	0.33	+1.5
4,580,764	+		SO4385	0.33	-2.1
4,580,764	+		SO4385	0.33	+0.5
4,580,764	+		SO4385	0.33	-0.4
4,580,764	+		SO4385	0.33	-0.3
4,580,764	+		SO4385	0.33	+0.3
4,580,764	+		SO4385	0.33	-2.5
4,580,764	+		SO4385	0.33	-3.0
4,580,764	+		SO4385	0.33	-1.0
4,580,764	+		SO4385	0.33	-1.5
4,580,764	+		SO4385	0.33	+0.2
4,580,764	+		SO4385	0.33	-2.5
4,580,764	+		SO4385	0.33	+1.0
4,580,764	+		SO4385	0.33	+1.0
4,580,764	+		SO4385	0.33	+1.0
4,580,764	+		SO4385	0.33	-1.0
4,580,764	+		SO4385	0.33	+0.5
4,580,764	+		SO4385	0.33	-0.1
4,580,764	+		SO4385	0.33	-0.2
4,580,764	+		SO4385	0.33	-2.1
4,580,764	+		SO4385	0.33	-0.7
4,580,764	+		SO4385	0.33	+0.1
4,580,764	+		SO4385	0.33	+1.0
4,580,764	+		SO4385	0.33	+0.3
4,580,764	+		SO4385	0.33	-0.7
4,580,764	+		SO4385	0.33	-2.1
4,580,764	+		SO4385	0.33	-0.2
4,580,764	+		SO4385	0.33	-2.1
4,580,764	+		SO4385	0.33	+1.0
4,580,771	+		SO4385	0.33	+0.5
4,580,771	+		SO4385	0.33	+2.1
4,580,771	+		SO4385	0.33	+0.6
4,580,772	-		SO4385	0.33	-0.8
4,580,772	-		SO4385	0.33	-2.1
4,580,772	-		SO4385	0.33	+0.3
4,580,772	-		SO4385	0.33	+0.0
4,580,772	-		SO4385	0.33	+0.7
4,580,772	-		SO4385	0.33	-0.3
4,580,772	-		SO4385	0.33	+1.3
4,580,772	-		SO4385	0.33	-0.8
4,580,772	-		SO4385	0.33	+1.5
4,580,772	-		SO4385	0.33	-2.5
4,580,772	-		SO4385	0.33	-2.2
4,580,772	-		SO4385	0.33	-0.6
4,580,772	-		SO4385	0.33	+0.1
4,580,772	-		SO4385	0.33	+0.0
4,580,772	-		SO4385	0.33	+0.1
4,580,772	-		SO4385	0.33	+0.1
4,580,772	-		SO4385	0.33	+0.3
4,580,772	-		SO4385	0.33	+0.8
4,580,772	-		SO4385	0.33	-1.2
4,580,772	-		SO4385	0.33	-0.7
4,580,772	-		SO4385	0.33	+0.5
4,580,772	-		SO4385	0.33	+0.4
4,580,772	-		SO4385	0.33	+1.4
4,580,772	-		SO4385	0.33	-0.9
4,580,772	-		SO4385	0.33	+2.1
4,580,772	-		SO4385	0.33	-0.8
4,580,772	-		SO4385	0.33	+1.1
4,580,772	-		SO4385	0.33	-2.4
4,580,772	-		SO4385	0.33	+1.4
4,580,772	-		SO4385	0.33	-0.1
4,580,772	-		SO4385	0.33	+0.4
4,580,772	-		SO4385	0.33	-0.9
4,580,772	-		SO4385	0.33	-1.5
4,580,772	-		SO4385	0.33	-1.2
4,580,772	-		SO4385	0.33	-3.0
4,580,772	-		SO4385	0.33	-0.9
4,580,772	-		SO4385	0.33	-0.4
4,580,772	-		SO4385	0.33	-3.2
4,580,772	-		SO4385	0.33	-1.2
4,580,772	-		SO4385	0.33	+0.8
4,580,772	-		SO4385	0.33	+0.4
4,580,772	-		SO4385	0.33	-1.7
4,580,772	-		SO4385	0.33	-1.6
4,580,772	-		SO4385	0.33	-0.5
4,580,772	-		SO4385	0.33	-0.4
4,580,772	-		SO4385	0.33	+1.1
4,580,772	-		SO4385	0.33	-2.9
4,580,772	-		SO4385	0.33	-0.1
4,580,772	-		SO4385	0.33	-0.2
4,580,772	-		SO4385	0.33	+0.4
4,580,772	-		SO4385	0.33	+0.4
4,580,772	-		SO4385	0.33	+0.2
4,580,772	-		SO4385	0.33	-0.9
4,580,772	-		SO4385	0.33	+1.0
4,580,772	-		SO4385	0.33	-0.5
4,580,772	-		SO4385	0.33	-2.3
4,580,772	-		SO4385	0.33	+0.9
4,580,772	-		SO4385	0.33	+0.5
4,580,772	-		SO4385	0.33	+0.4
4,580,772	-		SO4385	0.33	-1.7
4,580,772	-		SO4385	0.33	+0.7
4,580,772	-		SO4385	0.33	-2.4
4,580,774	-		SO4385	0.33	+0.6
4,580,774	-		SO4385	0.33	-0.6
4,580,776	+		SO4385	0.34	+0.3
4,580,776	+		SO4385	0.34	+2.0
4,580,776	+		SO4385	0.34	+0.1
4,580,776	+		SO4385	0.34	+1.2
4,580,776	+		SO4385	0.34	-0.6
4,580,776	+		SO4385	0.34	+0.9
4,580,776	+		SO4385	0.34	-0.4
4,580,778	+		SO4385	0.34	-0.3
4,580,779	-		SO4385	0.34	+1.2
4,580,783	+		SO4385	0.34	+0.3
4,580,784	-		SO4385	0.34	-2.9
4,580,784	-		SO4385	0.34	-2.7
4,580,784	-		SO4385	0.34	+0.1
4,580,784	-		SO4385	0.34	+0.1
4,580,785	-		SO4385	0.34	-1.6
4,580,792	-		SO4385	0.35	+1.2
4,580,795	-		SO4385	0.35	-1.7
4,580,795	-		SO4385	0.35	-0.3
4,580,844	+		SO4385	0.39	-0.5
4,580,852	-		SO4385	0.39	+0.4
4,580,854	+		SO4385	0.39	-0.6
4,580,862	-		SO4385	0.40	-2.4
4,580,868	-		SO4385	0.40	-0.5
4,580,874	+		SO4385	0.41	-0.7
4,580,874	+		SO4385	0.41	+0.9
4,580,876	+		SO4385	0.41	-1.7
4,580,882	-		SO4385	0.41	+1.6
4,580,884	-		SO4385	0.42	+0.7
4,580,884	-		SO4385	0.42	+1.4
4,580,884	-		SO4385	0.42	+0.6
4,580,891	+		SO4385	0.42	+0.6
4,580,891	+		SO4385	0.42	+1.7
4,580,899	-		SO4385	0.43	-3.1
4,580,900	-		SO4385	0.43	-1.0
4,580,902	+		SO4385	0.43	-0.2
4,580,910	-		SO4385	0.43	+0.3
4,580,912	+		SO4385	0.44	+2.1
4,580,919	+		SO4385	0.44	-0.8
4,580,920	-		SO4385	0.44	-0.2
4,580,941	+		SO4385	0.46	+0.0
4,580,963	+		SO4385	0.47	-0.6
4,580,983	-		SO4385	0.49	+0.1
4,581,004	+		SO4385	0.50	-1.1
4,581,104	+		SO4385	0.58	-1.2
4,581,104	+		SO4385	0.58	+2.7
4,581,112	-		SO4385	0.58	+1.4
4,581,114	+		SO4385	0.58	-0.3
4,581,114	+		SO4385	0.58	-1.3
4,581,114	+		SO4385	0.58	+0.7
4,581,114	+		SO4385	0.58	-0.3
4,581,114	+		SO4385	0.58	-0.7
4,581,122	-		SO4385	0.59	-2.9
4,581,122	-		SO4385	0.59	+0.2
4,581,122	-		SO4385	0.59	-1.7
4,581,122	-		SO4385	0.59	-0.0
4,581,122	-		SO4385	0.59	+0.2
4,581,122	-		SO4385	0.59	+1.1
4,581,167	-		SO4385	0.62	-1.0
4,581,181	+		SO4385	0.63	-0.9
4,581,187	+		SO4385	0.64	+1.7
4,581,187	+		SO4385	0.64	+0.1
4,581,190	-		SO4385	0.64	-0.7
4,581,195	-		SO4385	0.64	-0.6
4,581,245	-		SO4385	0.68	-1.9
4,581,289	-		SO4385	0.71	-1.1
4,581,332	+		SO4385	0.75	+1.1
4,581,347	+		SO4385	0.76	-2.2
4,581,350	-		SO4385	0.76	-0.2
4,581,351	-		SO4385	0.76	-0.4
4,581,352	+		SO4385	0.76	-2.2
4,581,361	-		SO4385	0.77	+1.1
4,581,362	+		SO4385	0.77	-0.9
4,581,367	-		SO4385	0.77	-1.2
4,581,370	-		SO4385	0.77	+1.7
4,581,370	-		SO4385	0.77	-1.7
4,581,370	-		SO4385	0.77	+0.9
4,581,370	-		SO4385	0.77	+3.4
4,581,370	-		SO4385	0.77	-0.9
4,581,370	-		SO4385	0.77	-0.5
4,581,418	+		SO4385	0.81	-1.1
4,581,426	-		SO4385	0.81	-1.6
4,581,471	-		SO4385	0.85	+1.1
4,581,472	+		SO4385	0.85	+1.0
4,581,472	-		SO4385	0.85	-1.7
4,581,479	-		SO4385	0.85	+3.1
4,581,507	-		SO4385	0.87	-0.6
4,581,507	-		SO4385	0.87	-2.2
4,581,512	-		SO4385	0.88	-1.5
4,581,539	+		SO4385	0.90	-0.7
4,581,643	+				+0.3
4,581,697	-				-0.1
4,581,697	-				+1.0
4,581,699	+				+0.4
4,581,766	-				+0.3