Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4302 and SO4303 are separated by 98 nucleotides SO4303 and SO4304 are separated by 5 nucleotides SO4304 and SO4305 are separated by 125 nucleotides
SO4302: SO4302 - conserved hypothetical protein (NCBI ptt file), at 4,480,919 to 4,481,587
SO4302
SO4303: SO4303 - hypothetical protein (NCBI ptt file), at 4,481,686 to 4,482,189
SO4303
SO4304: SO4304 - conserved hypothetical protein (NCBI ptt file), at 4,482,195 to 4,482,770
SO4304
SO4305: SO4305 - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file), at 4,482,896 to 4,483,618
SO4305
Position (kb) 4481
4482
4483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4481.049 kb on - strand, within SO4302 at 4481.057 kb on + strand, within SO4302 at 4481.057 kb on + strand, within SO4302 at 4481.065 kb on - strand, within SO4302 at 4481.065 kb on - strand, within SO4302 at 4481.065 kb on - strand, within SO4302 at 4481.112 kb on + strand, within SO4302 at 4481.249 kb on + strand, within SO4302 at 4481.332 kb on + strand, within SO4302 at 4481.332 kb on + strand, within SO4302 at 4481.342 kb on + strand, within SO4302 at 4481.522 kb on + strand at 4481.522 kb on + strand at 4481.522 kb on + strand at 4481.522 kb on + strand at 4481.522 kb on + strand at 4481.527 kb on + strand at 4481.530 kb on - strand at 4481.530 kb on - strand at 4481.617 kb on + strand at 4481.623 kb on + strand at 4481.732 kb on + strand at 4481.748 kb on + strand, within SO4303 at 4481.748 kb on + strand, within SO4303 at 4481.841 kb on + strand, within SO4303 at 4481.865 kb on - strand, within SO4303 at 4481.937 kb on - strand, within SO4303 at 4482.035 kb on + strand, within SO4303 at 4482.038 kb on - strand, within SO4303 at 4482.145 kb on - strand at 4482.164 kb on + strand at 4482.172 kb on - strand at 4482.256 kb on + strand, within SO4304 at 4482.259 kb on - strand, within SO4304 at 4482.304 kb on - strand, within SO4304 at 4482.304 kb on - strand, within SO4304 at 4482.389 kb on + strand, within SO4304 at 4482.389 kb on + strand, within SO4304 at 4482.544 kb on - strand, within SO4304 at 4482.623 kb on + strand, within SO4304 at 4482.671 kb on + strand, within SO4304 at 4482.672 kb on + strand, within SO4304 at 4482.679 kb on - strand, within SO4304 at 4482.723 kb on - strand at 4482.838 kb on + strand at 4482.846 kb on - strand at 4482.861 kb on + strand at 4482.947 kb on + strand at 4482.947 kb on + strand at 4482.955 kb on + strand at 4482.955 kb on - strand at 4482.972 kb on + strand, within SO4305 at 4483.044 kb on + strand, within SO4305 at 4483.075 kb on + strand, within SO4305 at 4483.083 kb on - strand, within SO4305 at 4483.136 kb on - strand, within SO4305
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 4,481,049 - SO4302 0.19 -1.5 4,481,057 + SO4302 0.21 -0.9 4,481,057 + SO4302 0.21 +0.4 4,481,065 - SO4302 0.22 -1.6 4,481,065 - SO4302 0.22 +0.7 4,481,065 - SO4302 0.22 +0.4 4,481,112 + SO4302 0.29 -1.3 4,481,249 + SO4302 0.49 -0.3 4,481,332 + SO4302 0.62 +0.2 4,481,332 + SO4302 0.62 -2.5 4,481,342 + SO4302 0.63 +0.9 4,481,522 + +0.7 4,481,522 + +1.1 4,481,522 + +0.7 4,481,522 + +0.2 4,481,522 + -1.0 4,481,527 + -0.3 4,481,530 - -0.5 4,481,530 - +1.1 4,481,617 + -0.8 4,481,623 + -2.4 4,481,732 + +0.3 4,481,748 + SO4303 0.12 +1.6 4,481,748 + SO4303 0.12 -0.5 4,481,841 + SO4303 0.31 +1.8 4,481,865 - SO4303 0.36 +2.3 4,481,937 - SO4303 0.50 -1.3 4,482,035 + SO4303 0.69 +2.9 4,482,038 - SO4303 0.70 +1.5 4,482,145 - +2.5 4,482,164 + +0.1 4,482,172 - +3.2 4,482,256 + SO4304 0.11 -0.5 4,482,259 - SO4304 0.11 +1.6 4,482,304 - SO4304 0.19 -0.8 4,482,304 - SO4304 0.19 -0.5 4,482,389 + SO4304 0.34 -1.2 4,482,389 + SO4304 0.34 -2.5 4,482,544 - SO4304 0.61 +0.5 4,482,623 + SO4304 0.74 -2.8 4,482,671 + SO4304 0.83 -0.3 4,482,672 + SO4304 0.83 +0.4 4,482,679 - SO4304 0.84 -1.9 4,482,723 - -2.7 4,482,838 + -3.9 4,482,846 - -1.0 4,482,861 + -2.6 4,482,947 + -1.3 4,482,947 + +0.9 4,482,955 + -0.0 4,482,955 - -0.7 4,482,972 + SO4305 0.11 +0.7 4,483,044 + SO4305 0.20 +2.4 4,483,075 + SO4305 0.25 +0.7 4,483,083 - SO4305 0.26 +0.2 4,483,136 - SO4305 0.33 -1.9
Or see this region's nucleotide sequence