Strain Fitness in Shewanella oneidensis MR-1 around SO3422

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
3,560,585	+				+1.2
3,560,585	+				+1.0
3,560,593	-				-0.6
3,560,593	-				+0.8
3,560,607	-				+0.4
3,560,608	+				+0.6
3,560,624	+				+1.7
3,560,632	-				+1.1
3,560,741	-		SO3421	0.23	+0.4
3,560,812	-		SO3421	0.33	+1.8
3,560,890	-		SO3421	0.44	+0.1
3,560,891	+		SO3421	0.44	-1.2
3,560,964	+		SO3421	0.55	+1.4
3,560,986	+		SO3421	0.58	+2.2
3,560,993	+		SO3421	0.59	+1.6
3,560,994	-		SO3421	0.59	-0.5
3,561,012	-		SO3421	0.62	-2.6
3,561,038	+		SO3421	0.65	+1.6
3,561,056	-		SO3421	0.68	-0.4
3,561,056	-		SO3421	0.68	-1.7
3,561,102	+		SO3421	0.75	+0.6
3,561,102	+		SO3421	0.75	+0.2
3,561,136	-		SO3421	0.80	-1.2
3,561,193	-		SO3421	0.88	-0.1
3,561,281	+				+0.4
3,561,282	-				+0.2
3,561,282	-				-1.0
3,561,282	-				-0.1
3,561,286	+				-0.4
3,561,289	-				-2.0
3,561,294	-				-1.6
3,561,294	-				+0.3
3,561,314	+				+1.8
3,561,369	+				-0.4
3,561,405	-				-0.1
3,561,415	-				-0.5
3,561,483	+				-0.6
3,561,483	+				-0.1
3,561,491	-				+0.1
3,561,569	+				-1.5
3,561,569	+				-0.8
3,561,594	-				-1.9
3,561,614	+	yfiA-2	SO3422	0.10	-2.2
3,561,629	-	yfiA-2	SO3422	0.14	-0.9
3,561,676	+	yfiA-2	SO3422	0.27	-2.5
3,561,684	-	yfiA-2	SO3422	0.30	-0.6
3,561,704	-	yfiA-2	SO3422	0.35	-1.8
3,561,766	+	yfiA-2	SO3422	0.53	+1.2
3,561,766	+	yfiA-2	SO3422	0.53	-3.8
3,561,781	+	yfiA-2	SO3422	0.57	-2.5
3,561,783	-	yfiA-2	SO3422	0.57	-0.1
3,561,807	-	yfiA-2	SO3422	0.64	+0.3
3,561,826	+	yfiA-2	SO3422	0.69	-2.8
3,561,833	+	yfiA-2	SO3422	0.71	-3.5
3,561,840	+	yfiA-2	SO3422	0.73	-1.0
3,561,841	-	yfiA-2	SO3422	0.74	-2.4
3,561,841	-	yfiA-2	SO3422	0.74	-0.0
3,561,880	+	yfiA-2	SO3422	0.85	+0.5
3,561,880	+	yfiA-2	SO3422	0.85	-0.9
3,561,905	-				+1.1
3,561,905	-				-1.2
3,561,907	+				-4.3
3,561,907	+				+0.2
3,561,907	+				+3.1
3,561,914	-				+1.0
3,561,915	-				+0.6
3,561,916	-				-0.4
3,561,917	+				+0.2
3,561,951	-				+1.8
3,561,951	-				+0.3
3,561,963	+				+0.3
3,561,963	+				+0.3
3,561,963	+				-0.5
3,561,973	+				+0.2
3,561,973	+				-0.2
3,561,981	-				+0.5
3,561,981	-				+1.0
3,561,998	+				+1.3
3,562,045	-				+1.3
3,562,076	+				-0.6
3,562,076	+				-0.4
3,562,097	+				+2.7
3,562,105	-				+0.2
3,562,105	-				+3.1
3,562,110	-				+1.3
3,562,140	+				+1.0
3,562,143	+				+0.8
3,562,153	+				-0.3
3,562,153	+				+0.7
3,562,161	-				-3.0
3,562,163	+				+0.0
3,562,241	-				-2.4
3,562,253	+				+1.6
3,562,253	+				+0.8
3,562,261	-				+1.5
3,562,265	+				-0.1
3,562,273	-				+1.7
3,562,319	-				-0.3
3,562,319	-				+1.9
3,562,333	+				-2.0
3,562,333	+				+0.7
3,562,333	+				-0.0
3,562,333	+				+1.0
3,562,333	+				+1.8
3,562,333	+				-0.0
3,562,333	+				+0.8
3,562,333	+				+0.3
3,562,333	+				-2.1
3,562,333	+				+0.7
3,562,336	+				-0.8
3,562,336	+				-0.0
3,562,336	-				-0.6
3,562,340	+				+2.7
3,562,340	+				+2.9
3,562,341	-				+0.7
3,562,341	-				+1.6
3,562,341	-				+2.2
3,562,341	-				+0.6
3,562,341	-				+2.4
3,562,341	-				-1.0
3,562,341	-				+0.0
3,562,343	+				+0.5
3,562,343	+				+0.8
3,562,344	-				+1.9
3,562,379	+				-0.1
3,562,379	+				-1.5
3,562,379	+				+0.3
3,562,387	-				-0.2
3,562,387	-				+0.5
3,562,387	-				+2.2
3,562,387	-				-0.5
3,562,387	-				+0.2
3,562,387	-				-0.4
3,562,387	-				+4.0
3,562,388	+				+0.6
3,562,389	+				+0.1
3,562,395	-				+1.5
3,562,395	-				+0.2
3,562,414	-				+0.7
3,562,424	-				-0.1
3,562,433	-				+2.0
3,562,433	-				+0.6
3,562,433	-				-3.2
3,562,442	-				-2.0
3,562,447	-				-0.2
3,562,450	+				+2.7
3,562,453	-				-0.2
3,562,528	-				-0.4
3,562,538	-				-0.5
3,562,556	-				-0.5
3,562,578	-				+0.2
3,562,578	-				+0.5
3,562,578	-				+0.0
3,562,604	+				-0.7
3,562,612	-				-2.7
3,562,612	-				+1.2
3,562,616	+				-0.0
3,562,616	+				+2.9
3,562,616	+				+0.7
3,562,624	-				+2.2
3,562,626	+				+1.4
3,562,626	-				+1.2
3,562,639	+				+1.9
3,562,639	+				-0.7
3,562,639	+				-3.3
3,562,639	+				+1.4
3,562,639	+				+0.8
3,562,639	+				+0.4
3,562,639	+				+0.9
3,562,639	+				-1.1
3,562,639	+				-0.5
3,562,639	+				-1.0
3,562,639	+				-2.2
3,562,639	+				-3.6
3,562,647	-				+1.9
3,562,647	-				+0.9
3,562,647	-				+2.5
3,562,647	-				+0.9
3,562,647	-				-0.0
3,562,647	-				+0.0
3,562,647	-				+1.4
3,562,647	-				+1.2
3,562,647	-				+1.0
3,562,647	-				+0.1
3,562,647	-				-1.2
3,562,647	-				-0.6
3,562,649	+				-2.8
3,562,649	+				+1.7
3,562,649	+				+0.6
3,562,649	+				+0.0
3,562,649	+				+0.4
3,562,649	+				-1.9
3,562,649	+				-0.3
3,562,649	+				+0.6
3,562,649	+				-0.3
3,562,649	+				-0.5
3,562,649	+				+0.6
3,562,649	+				+0.4
3,562,649	+				+0.1
3,562,649	+				+1.0
3,562,649	+				-0.5
3,562,649	+				+1.6
3,562,649	+				-1.6
3,562,649	+				+0.0
3,562,649	+				-3.1
3,562,649	+				-2.3
3,562,649	+				+0.6
3,562,649	+				-1.7
3,562,649	+				+0.3
3,562,649	+				-1.5
3,562,649	+				-1.1
3,562,649	+				+0.0
3,562,649	+				-0.6
3,562,649	+				-0.7
3,562,649	+				+0.8
3,562,657	-				+1.2
3,562,657	-				+0.3
3,562,657	-				+1.3
3,562,657	-				-1.7
3,562,657	-				-0.5
3,562,657	-				+0.6
3,562,657	-				+1.3
3,562,657	-				+2.2
3,562,657	-				+2.0
3,562,657	-				+1.1
3,562,657	-				+0.2
3,562,657	-				+3.4
3,562,657	-				+1.1
3,562,657	-				-1.4
3,562,657	-				+0.1
3,562,707	-				+1.5
3,562,709	-				+1.0
3,562,736	+				+0.2
3,562,736	+				+0.7
3,562,736	+				+0.2
3,562,736	+				-3.6
3,562,736	+				-2.0
3,562,736	+				-1.4
3,562,738	+				+0.2
3,562,738	+				-2.8
3,562,744	-				+0.7
3,562,744	-				+1.1
3,562,744	-				-0.6
3,562,744	-				+2.4
3,562,744	-				-0.3
3,562,746	-				-0.2
3,562,765	+				+2.5
3,562,774	+				-1.0
3,562,782	+				-0.1
3,562,806	+				+0.2
3,562,810	+				-0.7
3,562,810	+				+2.8
3,562,818	-				+0.8
3,562,818	-				+0.2
3,562,818	-				-0.3
3,562,818	-				-0.1
3,562,835	+				+0.9
3,562,837	+				+0.5
3,562,841	+				-2.3
3,562,842	+				+2.6
3,562,843	+				-1.4
3,562,850	-				+1.3
3,562,850	-				+0.0
3,562,850	-				-0.4