Strain Fitness in Shewanella oneidensis MR-1 around SO2570

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
2,698,293	-	menG-1	SO2567	0.64	-0.8
2,698,322	-	menG-1	SO2567	0.69	+1.4
2,698,351	-	menG-1	SO2567	0.75	-0.9
2,698,471	-				-2.3
2,698,476	+				-1.9
2,698,495	+				+0.1
2,698,495	+				+0.8
2,698,503	-				-0.4
2,698,503	-				+0.5
2,698,507	+				+0.7
2,698,512	-				-1.9
2,698,512	-				-0.7
2,698,514	-				-0.4
2,698,528	+				-1.0
2,698,535	-				-0.4
2,698,566	+				-1.0
2,698,566	+				-0.3
2,698,566	+				-0.3
2,698,574	-				-0.9
2,698,590	-				-1.5
2,698,612	+				-1.7
2,698,612	+				+0.3
2,698,620	-				-0.5
2,698,629	+				-3.1
2,698,629	+				-1.6
2,698,629	+				-1.7
2,698,629	+				-1.7
2,698,629	+				+1.0
2,698,629	+				+0.3
2,698,631	+				+1.0
2,698,637	-				+0.1
2,698,637	-				-0.4
2,698,637	-				-0.6
2,698,637	-				-1.1
2,698,637	-				-0.1
2,698,637	-				-1.5
2,698,638	-				-2.6
2,698,709	+				-1.5
2,698,836	+		SO2569	0.42	-2.6
2,698,983	+		SO2569	0.88	-3.3
2,699,024	+				+0.7
2,699,029	+				-0.8
2,699,030	+				-0.5
2,699,032	-				+1.0
2,699,037	-				+0.7
2,699,037	-				+1.6
2,699,038	-				+2.0
2,699,038	-				+3.2
2,699,051	-				+1.8
2,699,065	+				-2.9
2,699,067	+				+1.2
2,699,075	-				+1.0
2,699,077	+				+0.1
2,699,180	+				-0.3
2,699,180	+				+1.9
2,699,181	+				+1.5
2,699,237	-				+1.0
2,699,251	-				+0.7
2,699,295	-				+0.9
2,699,301	-				+2.2
2,699,301	-				+0.4
2,699,303	+				-2.9
2,699,339	+				+0.3
2,699,339	+				+0.5
2,699,347	-				-0.9
2,699,347	-				-1.4
2,699,352	-				-0.3
2,699,360	+				+2.7
2,699,360	+				-2.9
2,699,361	-				+0.8
2,699,361	-				+1.1
2,699,370	+				+1.3
2,699,375	+				+0.6
2,699,375	+				-0.7
2,699,375	+				+0.9
2,699,375	+				-0.2
2,699,375	+				+0.4
2,699,375	+				+1.8
2,699,375	+				-1.4
2,699,375	+				+0.3
2,699,375	+				+0.1
2,699,378	-		SO2570	0.10	+2.2
2,699,383	-		SO2570	0.10	+0.4
2,699,383	-		SO2570	0.10	+1.4
2,699,383	-		SO2570	0.10	-0.9
2,699,383	-		SO2570	0.10	+0.7
2,699,396	-		SO2570	0.11	-0.5
2,699,429	-		SO2570	0.13	-2.3
2,699,430	-		SO2570	0.13	+0.8
2,699,464	+		SO2570	0.15	+0.8
2,699,484	+		SO2570	0.16	+1.8
2,699,484	+		SO2570	0.16	+1.0
2,699,484	+		SO2570	0.16	+1.2
2,699,484	+		SO2570	0.16	+1.7
2,699,484	+		SO2570	0.16	-1.7
2,699,484	+		SO2570	0.16	+0.4
2,699,487	-		SO2570	0.16	+1.6
2,699,492	-		SO2570	0.16	+1.3
2,699,492	-		SO2570	0.16	-1.6
2,699,541	-		SO2570	0.19	-0.1
2,699,543	-		SO2570	0.19	+2.1
2,699,545	+		SO2570	0.19	-0.8
2,699,556	+		SO2570	0.20	+2.0
2,699,564	-		SO2570	0.21	+1.5
2,699,596	+		SO2570	0.22	+1.0
2,699,601	+		SO2570	0.23	-3.4
2,699,601	+		SO2570	0.23	+1.2
2,699,601	+		SO2570	0.23	-0.3
2,699,602	+		SO2570	0.23	+2.1
2,699,609	-		SO2570	0.23	-0.1
2,699,609	-		SO2570	0.23	+3.5
2,699,609	-		SO2570	0.23	+1.8
2,699,609	-		SO2570	0.23	-0.2
2,699,610	-		SO2570	0.23	-1.3
2,699,639	-		SO2570	0.25	+0.8
2,699,642	+		SO2570	0.25	+1.9
2,699,662	-		SO2570	0.26	-0.0
2,699,674	+		SO2570	0.27	+0.1
2,699,674	+		SO2570	0.27	+1.3
2,699,674	+		SO2570	0.27	+0.3
2,699,681	+		SO2570	0.27	+2.3
2,699,682	-		SO2570	0.27	+0.3
2,699,689	-		SO2570	0.28	-2.3
2,699,689	-		SO2570	0.28	-1.0
2,699,699	-		SO2570	0.28	+0.9
2,699,753	-		SO2570	0.31	+1.8
2,699,771	-		SO2570	0.32	-0.3
2,699,786	+		SO2570	0.33	-1.7
2,699,788	-		SO2570	0.33	+0.9
2,699,818	+		SO2570	0.35	+0.6
2,699,827	-		SO2570	0.35	+1.1
2,699,832	+		SO2570	0.36	+0.6
2,699,856	+		SO2570	0.37	+1.0
2,699,862	-		SO2570	0.37	-0.1
2,699,862	-		SO2570	0.37	+0.8
2,699,864	-		SO2570	0.37	+0.1
2,699,980	+		SO2570	0.44	+1.9
2,700,052	-		SO2570	0.48	-0.8
2,700,082	-		SO2570	0.50	+0.9
2,700,101	-		SO2570	0.51	+1.0
2,700,111	+		SO2570	0.51	-0.8
2,700,114	-		SO2570	0.51	-0.1
2,700,143	+		SO2570	0.53	-1.3
2,700,213	+		SO2570	0.57	-0.4
2,700,214	-		SO2570	0.57	+1.9
2,700,248	-		SO2570	0.59	-1.2
2,700,419	+		SO2570	0.69	+0.4
2,700,419	+		SO2570	0.69	+0.7
2,700,419	+		SO2570	0.69	+1.4
2,700,419	+		SO2570	0.69	-0.5
2,700,419	+		SO2570	0.69	+0.6
2,700,419	+		SO2570	0.69	-1.7
2,700,419	+		SO2570	0.69	-2.7
2,700,419	+		SO2570	0.69	-0.3
2,700,419	+		SO2570	0.69	+2.6
2,700,427	-		SO2570	0.69	+0.1
2,700,427	-		SO2570	0.69	-0.3
2,700,427	-		SO2570	0.69	-1.7
2,700,488	+		SO2570	0.72	-0.9
2,700,494	-		SO2570	0.73	-0.3
2,700,494	-		SO2570	0.73	+1.6
2,700,494	-		SO2570	0.73	+0.7
2,700,560	+		SO2570	0.77	-0.5
2,700,667	-		SO2570	0.83	+0.5
2,700,720	+		SO2570	0.85	+0.2
2,700,897	+				-1.9
2,700,997	+				-1.3
2,700,997	+				+0.8
2,701,010	+				-0.8
2,701,014	+				+0.2
2,701,014	+				+1.8
2,701,023	-				+0.4
2,701,100	-				+1.3
2,701,161	+				+2.7
2,701,169	-				+0.3
2,701,207	+				-0.0
2,701,216	-				-2.3
2,701,218	+				-2.7
2,701,293	+				+1.2
2,701,301	-				-0.5
2,701,329	+				+3.2
2,701,337	-				+0.1
2,701,369	+				+1.9
2,701,401	+				-0.1
2,701,409	-				+2.1
2,701,566	+		SO2571	0.16	-2.9
2,701,568	-		SO2571	0.16	+2.1
2,701,709	-		SO2571	0.26	-1.4
2,701,792	+		SO2571	0.32	+0.8
2,701,914	-		SO2571	0.41	+2.1
2,701,918	+		SO2571	0.41	-0.7
2,701,918	+		SO2571	0.41	+0.3