Strain Fitness in Shewanella oneidensis MR-1 around SO2323

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
2,431,898	+				+0.5
2,431,898	+				-0.3
2,431,910	+				+1.9
2,431,917	-				-0.3
2,431,987	+				+1.1
2,431,987	+				-3.1
2,431,995	-				+0.5
2,431,995	-				+0.5
2,432,000	-				+0.6
2,432,093	+				-0.9
2,432,105	+				+0.8
2,432,105	+				-0.1
2,432,105	+				+0.1
2,432,111	-				+0.5
2,432,113	-				+0.1
2,432,113	-				+0.9
2,432,113	-				+0.4
2,432,118	-				+0.5
2,432,118	-				-0.2
2,432,147	-		SO_2322	0.14	-1.7
2,432,174	-		SO_2322	0.17	+1.5
2,432,251	+		SO_2322	0.27	+3.3
2,432,296	+		SO_2322	0.33	+0.3
2,432,329	-		SO_2322	0.37	-0.7
2,432,329	-		SO_2322	0.37	+1.5
2,432,392	-		SO_2322	0.45	+1.3
2,432,397	+		SO_2322	0.46	+0.6
2,432,428	-		SO_2322	0.50	+0.8
2,432,447	+		SO_2322	0.53	-1.2
2,432,451	-		SO_2322	0.53	+0.2
2,432,482	+		SO_2322	0.57	+0.7
2,432,482	+		SO_2322	0.57	-2.3
2,432,490	-		SO_2322	0.58	-0.9
2,432,554	+		SO_2322	0.67	-0.6
2,432,572	+		SO_2322	0.69	-2.9
2,432,577	+		SO_2322	0.70	+1.9
2,432,597	+		SO_2322	0.72	+1.3
2,432,678	+		SO_2322	0.83	+0.5
2,432,685	+		SO_2322	0.84	+0.8
2,432,685	+		SO_2322	0.84	+1.4
2,432,685	+		SO_2322	0.84	-0.7
2,432,685	+		SO_2322	0.84	-3.4
2,432,685	+		SO_2322	0.84	+0.1
2,432,685	+		SO_2322	0.84	-3.7
2,432,687	-		SO_2322	0.84	-0.3
2,432,687	-		SO_2322	0.84	+0.8
2,432,692	-		SO_2322	0.85	+0.4
2,432,693	-		SO_2322	0.85	-0.5
2,432,693	-		SO_2322	0.85	-0.9
2,432,693	-		SO_2322	0.85	+1.3
2,432,725	+		SO_2322	0.89	-1.0
2,432,731	+		SO_2322	0.90	-0.1
2,432,732	-		SO_2322	0.90	-2.8
2,432,732	-		SO_2322	0.90	+0.9
2,432,739	-				+0.8
2,432,798	+				-1.3
2,432,934	+				+0.0
2,432,934	+				-0.4
2,432,934	+				+1.1
2,432,942	-				+0.1
2,432,942	-				-0.5
2,432,950	-				+0.2
2,432,976	-				-2.3
2,432,976	-				+2.4
2,432,981	+				-2.2
2,432,989	-				-1.3
2,433,008	-				+4.4
2,433,022	+				+1.7
2,433,030	-		SO2323	0.10	+0.3
2,433,076	+		SO2323	0.12	+0.7
2,433,169	-		SO2323	0.17	+0.7
2,433,203	-		SO2323	0.19	+0.5
2,433,255	-		SO2323	0.22	+2.2
2,433,262	+		SO2323	0.22	+0.9
2,433,269	+		SO2323	0.22	-0.6
2,433,269	+		SO2323	0.22	+0.4
2,433,269	+		SO2323	0.22	+0.4
2,433,277	-		SO2323	0.23	+1.0
2,433,277	-		SO2323	0.23	-0.4
2,433,277	-		SO2323	0.23	+1.0
2,433,277	-		SO2323	0.23	+0.3
2,433,277	-		SO2323	0.23	-1.2
2,433,304	+		SO2323	0.24	+0.9
2,433,304	+		SO2323	0.24	+0.3
2,433,311	-		SO2323	0.24	+0.9
2,433,312	-		SO2323	0.25	-1.5
2,433,344	-		SO2323	0.26	-0.9
2,433,355	+		SO2323	0.27	+1.1
2,433,362	+		SO2323	0.27	+2.2
2,433,362	+		SO2323	0.27	-0.5
2,433,362	+		SO2323	0.27	-1.3
2,433,362	+		SO2323	0.27	-3.3
2,433,362	+		SO2323	0.27	+0.7
2,433,362	+		SO2323	0.27	-1.7
2,433,362	+		SO2323	0.27	+0.0
2,433,362	+		SO2323	0.27	-0.6
2,433,362	+		SO2323	0.27	-3.5
2,433,362	+		SO2323	0.27	+0.3
2,433,362	+		SO2323	0.27	+1.2
2,433,362	+		SO2323	0.27	-3.1
2,433,367	+		SO2323	0.27	-0.5
2,433,370	-		SO2323	0.28	+0.1
2,433,370	-		SO2323	0.28	+1.4
2,433,370	-		SO2323	0.28	+0.2
2,433,370	-		SO2323	0.28	+1.0
2,433,370	-		SO2323	0.28	+1.0
2,433,370	-		SO2323	0.28	-2.2
2,433,370	-		SO2323	0.28	+1.2
2,433,370	-		SO2323	0.28	+1.1
2,433,370	-		SO2323	0.28	+2.0
2,433,370	-		SO2323	0.28	-0.3
2,433,370	-		SO2323	0.28	-1.9
2,433,370	-		SO2323	0.28	-0.3
2,433,407	-		SO2323	0.29	+2.9
2,433,433	+		SO2323	0.31	-0.3
2,433,626	+		SO2323	0.41	+2.1
2,433,626	+		SO2323	0.41	-0.3
2,433,626	+		SO2323	0.41	-0.2
2,433,626	+		SO2323	0.41	-0.3
2,433,626	+		SO2323	0.41	+0.2
2,433,626	+		SO2323	0.41	-1.8
2,433,629	-		SO2323	0.41	+0.3
2,433,634	-		SO2323	0.41	+2.1
2,433,634	-		SO2323	0.41	+1.1
2,433,634	-		SO2323	0.41	+1.0
2,433,634	-		SO2323	0.41	+0.3
2,433,634	-		SO2323	0.41	-0.5
2,433,634	-		SO2323	0.41	-0.9
2,433,634	-		SO2323	0.41	+2.0
2,433,686	+		SO2323	0.44	+0.2
2,433,686	+		SO2323	0.44	+0.8
2,433,694	-		SO2323	0.44	-0.2
2,433,720	+		SO2323	0.46	+0.4
2,433,720	+		SO2323	0.46	+2.8
2,433,729	-		SO2323	0.46	+1.7
2,433,729	-		SO2323	0.46	-1.5
2,433,729	-		SO2323	0.46	+0.4
2,433,729	-		SO2323	0.46	+1.7
2,433,823	-		SO2323	0.51	-0.7
2,433,878	+		SO2323	0.54	-0.1
2,433,878	+		SO2323	0.54	+0.3
2,433,878	+		SO2323	0.54	+1.7
2,433,886	-		SO2323	0.54	+0.5
2,433,905	+		SO2323	0.55	+1.4
2,433,925	+		SO2323	0.56	+0.7
2,433,969	-		SO2323	0.58	-2.2
2,433,984	+		SO2323	0.59	+0.7
2,433,995	+		SO2323	0.60	-2.7
2,434,002	+		SO2323	0.60	+1.8
2,434,002	+		SO2323	0.60	-1.7
2,434,010	-		SO2323	0.60	+1.8
2,434,037	+		SO2323	0.62	-0.7
2,434,045	-		SO2323	0.62	+1.7
2,434,063	-		SO2323	0.63	-0.6
2,434,107	-		SO2323	0.65	-0.1
2,434,160	+		SO2323	0.68	+0.7
2,434,169	-		SO2323	0.69	+2.8
2,434,180	+		SO2323	0.69	+1.2
2,434,295	+		SO2323	0.75	+1.3
2,434,316	+		SO2323	0.76	+1.4
2,434,317	-		SO2323	0.76	+1.5
2,434,331	+		SO2323	0.77	+1.7
2,434,331	+		SO2323	0.77	+1.7
2,434,339	-		SO2323	0.77	+0.8
2,434,559	-		SO2323	0.89	+1.0
2,434,640	+				-0.1
2,434,684	+				-1.5
2,434,789	-				+0.6
2,434,923	+				+0.1
2,434,923	+	cheW-2	SO2324	0.25	+0.1
2,435,186	+	cheW-2	SO2324	0.74	+1.8
2,435,208	+	cheW-2	SO2324	0.78	+0.9
2,435,214	-	cheW-2	SO2324	0.79	+0.1
2,435,214	-	cheW-2	SO2324	0.79	-0.9
2,435,227	-	cheW-2	SO2324	0.81	+2.2
2,435,254	+	cheW-2	SO2324	0.86	+0.3
2,435,325	+				-2.0
2,435,328	-				+1.4
2,435,328	-				+2.4
2,435,342	+				-0.6
2,435,356	+				-0.0
2,435,364	-				-0.5
2,435,448	+	cheR-3	SO2325	0.15	-0.5
2,435,694	+	cheR-3	SO2325	0.45	+0.5
2,435,697	-	cheR-3	SO2325	0.45	-3.6
2,435,726	-	cheR-3	SO2325	0.49	+0.8
2,435,753	+	cheR-3	SO2325	0.52	+0.1
2,435,753	-	cheR-3	SO2325	0.52	-0.5
2,435,761	-	cheR-3	SO2325	0.53	+1.3
2,435,772	+	cheR-3	SO2325	0.54	+1.3