Strain Fitness in Shewanella oneidensis MR-1 around SO1694

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
1,779,549	-		SO1692	0.15	-0.1
1,779,589	-		SO1692	0.19	+0.7
1,779,618	-		SO1692	0.23	+0.4
1,779,698	+		SO1692	0.31	+0.4
1,779,758	+		SO1692	0.38	-0.3
1,779,760	-		SO1692	0.38	+2.7
1,779,778	-		SO1692	0.40	-0.3
1,779,794	-		SO1692	0.42	-0.3
1,779,813	+		SO1692	0.44	+0.4
1,779,911	+		SO1692	0.55	+1.0
1,779,941	-		SO1692	0.58	-2.8
1,780,043	+		SO1692	0.69	+1.1
1,780,145	-		SO1692	0.81	-1.6
1,780,210	+		SO1692	0.88	+1.7
1,780,258	-				+1.4
1,780,291	+				+2.2
1,780,319	+				-0.4
1,780,336	-				-2.9
1,780,550	+				+0.7
1,780,550	+				-1.0
1,780,558	-				-0.6
1,780,709	+				+0.3
1,780,717	-				-1.2
1,780,765	-		SO1694	0.10	+0.0
1,780,780	-		SO1694	0.11	+0.1
1,780,860	+		SO1694	0.14	+1.9
1,780,947	+		SO1694	0.17	-2.1
1,781,173	+		SO1694	0.25	+1.8
1,781,190	+		SO1694	0.26	+3.9
1,781,193	-		SO1694	0.26	-1.2
1,781,463	+		SO1694	0.36	+0.2
1,781,471	-		SO1694	0.36	-1.3
1,781,514	+		SO1694	0.38	+0.7
1,781,522	-		SO1694	0.38	-0.2
1,781,534	-		SO1694	0.39	-0.8
1,781,534	-		SO1694	0.39	+3.0
1,781,599	-		SO1694	0.41	+0.9
1,781,673	-		SO1694	0.44	+0.9
1,781,673	-		SO1694	0.44	-1.2
1,781,673	-		SO1694	0.44	+0.9
1,781,856	+		SO1694	0.51	-1.9
1,781,864	-		SO1694	0.51	+0.8
1,781,955	+		SO1694	0.54	-3.4
1,781,955	+		SO1694	0.54	+0.8
1,781,956	+		SO1694	0.54	-1.1
1,781,963	-		SO1694	0.55	-2.8
1,781,963	-		SO1694	0.55	-0.7
1,781,964	-		SO1694	0.55	-0.0
1,782,082	+		SO1694	0.59	+0.5
1,782,082	+		SO1694	0.59	+0.3
1,782,082	+		SO1694	0.59	+0.1
1,782,087	+		SO1694	0.59	-2.3
1,782,090	-		SO1694	0.59	+2.3
1,782,090	-		SO1694	0.59	+1.2
1,782,095	-		SO1694	0.60	+1.0
1,782,095	-		SO1694	0.60	-0.1
1,782,116	+		SO1694	0.60	+1.1
1,782,116	+		SO1694	0.60	+2.5
1,782,116	+		SO1694	0.60	-0.7
1,782,116	+		SO1694	0.60	-2.6
1,782,116	+		SO1694	0.60	+1.0
1,782,116	+		SO1694	0.60	+1.0
1,782,116	+		SO1694	0.60	-1.6
1,782,116	+		SO1694	0.60	+0.2
1,782,116	+		SO1694	0.60	+1.4
1,782,116	+		SO1694	0.60	+0.2
1,782,116	+		SO1694	0.60	+0.1
1,782,116	+		SO1694	0.60	+1.1
1,782,116	+		SO1694	0.60	+0.7
1,782,116	+		SO1694	0.60	-0.1
1,782,116	+		SO1694	0.60	-1.9
1,782,116	+		SO1694	0.60	-0.2
1,782,116	+		SO1694	0.60	-2.4
1,782,116	+		SO1694	0.60	+2.8
1,782,116	+		SO1694	0.60	-2.5
1,782,116	+		SO1694	0.60	-2.7
1,782,116	+		SO1694	0.60	+1.0
1,782,120	+		SO1694	0.61	-0.8
1,782,121	+		SO1694	0.61	-1.3
1,782,124	-		SO1694	0.61	-0.6
1,782,124	-		SO1694	0.61	-2.8
1,782,124	-		SO1694	0.61	+0.5
1,782,124	-		SO1694	0.61	-0.7
1,782,124	-		SO1694	0.61	+0.3
1,782,124	-		SO1694	0.61	+0.4
1,782,124	-		SO1694	0.61	+0.9
1,782,124	-		SO1694	0.61	+0.9
1,782,124	-		SO1694	0.61	-0.8
1,782,124	-		SO1694	0.61	-0.3
1,782,124	-		SO1694	0.61	+0.8
1,782,124	-		SO1694	0.61	-0.6
1,782,124	-		SO1694	0.61	+3.2
1,782,124	-		SO1694	0.61	+1.4
1,782,124	-		SO1694	0.61	-0.3
1,782,124	-		SO1694	0.61	-1.8
1,782,124	-		SO1694	0.61	-0.4
1,782,124	-		SO1694	0.61	+2.2
1,782,124	-		SO1694	0.61	-0.7
1,782,124	-		SO1694	0.61	-1.5
1,782,124	-		SO1694	0.61	+2.0
1,782,124	-		SO1694	0.61	+0.6
1,782,124	-		SO1694	0.61	+0.5
1,782,124	-		SO1694	0.61	+1.0
1,782,124	-		SO1694	0.61	+1.7
1,782,124	-		SO1694	0.61	+1.1
1,782,129	-		SO1694	0.61	+0.5
1,782,161	-		SO1694	0.62	+1.0
1,782,161	-		SO1694	0.62	+1.4
1,782,161	-		SO1694	0.62	+1.5
1,782,168	-		SO1694	0.62	-0.6
1,782,198	+		SO1694	0.63	+0.4
1,782,198	+		SO1694	0.63	+1.9
1,782,237	-		SO1694	0.65	+0.2
1,782,255	-		SO1694	0.66	-1.4
1,782,297	+		SO1694	0.67	-1.6
1,782,297	+		SO1694	0.67	-2.9
1,782,297	+		SO1694	0.67	-0.9
1,782,297	+		SO1694	0.67	-0.0
1,782,297	+		SO1694	0.67	+0.6
1,782,297	+		SO1694	0.67	+1.5
1,782,297	+		SO1694	0.67	-1.6
1,782,297	+		SO1694	0.67	+0.7
1,782,297	+		SO1694	0.67	+1.9
1,782,297	+		SO1694	0.67	+0.4
1,782,302	+		SO1694	0.67	+1.2
1,782,302	+		SO1694	0.67	+0.1
1,782,302	+		SO1694	0.67	+0.2
1,782,304	-		SO1694	0.67	+1.7
1,782,305	-		SO1694	0.67	+0.3
1,782,305	-		SO1694	0.67	-1.2
1,782,305	-		SO1694	0.67	+0.1
1,782,305	-		SO1694	0.67	+1.0
1,782,305	-		SO1694	0.67	-0.6
1,782,305	-		SO1694	0.67	-0.4
1,782,310	-		SO1694	0.68	-2.2
1,782,310	-		SO1694	0.68	-0.7
1,782,310	-		SO1694	0.68	+0.5
1,782,310	-		SO1694	0.68	+1.9
1,782,312	-		SO1694	0.68	-0.7
1,782,324	+		SO1694	0.68	+0.5
1,782,331	-		SO1694	0.68	+1.0
1,782,349	+		SO1694	0.69	+0.1
1,782,354	+		SO1694	0.69	+1.0
1,782,354	+		SO1694	0.69	-2.2
1,782,354	+		SO1694	0.69	-0.2
1,782,354	+		SO1694	0.69	-0.3
1,782,354	+		SO1694	0.69	-0.3
1,782,354	+		SO1694	0.69	+1.6
1,782,354	+		SO1694	0.69	+0.1
1,782,354	+		SO1694	0.69	-0.6
1,782,354	+		SO1694	0.69	+1.1
1,782,354	+		SO1694	0.69	+1.0
1,782,354	+		SO1694	0.69	-0.2
1,782,354	+		SO1694	0.69	-0.7
1,782,357	-		SO1694	0.69	+1.2
1,782,362	-		SO1694	0.70	+0.1
1,782,362	-		SO1694	0.70	-2.2
1,782,362	-		SO1694	0.70	-3.9
1,782,362	-		SO1694	0.70	+2.2
1,782,362	-		SO1694	0.70	+0.4
1,782,362	-		SO1694	0.70	-0.2
1,782,362	-		SO1694	0.70	+0.7
1,782,362	-		SO1694	0.70	+1.4
1,782,362	-		SO1694	0.70	+0.5
1,782,362	-		SO1694	0.70	+0.4
1,782,362	-		SO1694	0.70	+2.2
1,782,362	-		SO1694	0.70	-0.4
1,782,362	-		SO1694	0.70	+1.5
1,782,362	-		SO1694	0.70	-0.0
1,782,362	-		SO1694	0.70	+0.9
1,782,362	-		SO1694	0.70	+1.6
1,782,362	-		SO1694	0.70	+0.4
1,782,393	+		SO1694	0.71	-0.5
1,782,397	+		SO1694	0.71	-0.6
1,782,400	+		SO1694	0.71	-3.6
1,782,405	-		SO1694	0.71	+0.9
1,782,414	+		SO1694	0.71	-2.5
1,782,414	+		SO1694	0.71	+0.8
1,782,419	+		SO1694	0.72	-0.7
1,782,419	+		SO1694	0.72	-3.3
1,782,419	+		SO1694	0.72	-1.3
1,782,420	+		SO1694	0.72	+0.4
1,782,422	-		SO1694	0.72	+1.0
1,782,422	-		SO1694	0.72	+0.9
1,782,422	-		SO1694	0.72	+1.2
1,782,429	+		SO1694	0.72	+1.4
1,782,429	+		SO1694	0.72	-2.9
1,782,429	+		SO1694	0.72	+0.5
1,782,437	-		SO1694	0.72	-1.1
1,782,437	-		SO1694	0.72	+1.3
1,782,445	+		SO1694	0.73	-0.7
1,782,453	-		SO1694	0.73	-1.9
1,782,453	-		SO1694	0.73	+0.1
1,782,453	-		SO1694	0.73	+1.6
1,782,458	+		SO1694	0.73	+3.0
1,782,458	+		SO1694	0.73	-1.2
1,782,458	+		SO1694	0.73	-0.6
1,782,466	-		SO1694	0.73	-1.6
1,782,525	-		SO1694	0.76	+2.9
1,782,552	+		SO1694	0.77	-1.6
1,782,552	+		SO1694	0.77	-0.9
1,782,560	-		SO1694	0.77	+2.1
1,782,617	+		SO1694	0.79	+0.5
1,782,617	+		SO1694	0.79	+0.5
1,782,617	+		SO1694	0.79	+1.2
1,782,625	+		SO1694	0.79	-1.0
1,782,639	+		SO1694	0.80	-3.1
1,782,639	+		SO1694	0.80	+0.6
1,782,639	+		SO1694	0.80	+0.6
1,782,639	+		SO1694	0.80	-0.1
1,782,639	+		SO1694	0.80	-1.8
1,782,647	-		SO1694	0.80	+0.0
1,782,647	-		SO1694	0.80	+1.1
1,782,689	+		SO1694	0.82	+1.4
1,782,689	+		SO1694	0.82	-0.3
1,782,689	+		SO1694	0.82	+0.7
1,782,689	+		SO1694	0.82	+0.5
1,782,689	+		SO1694	0.82	+0.2
1,782,689	+		SO1694	0.82	-0.3
1,782,689	+		SO1694	0.82	-1.0
1,782,689	+		SO1694	0.82	-3.2
1,782,689	+		SO1694	0.82	+0.1
1,782,694	+		SO1694	0.82	-1.9
1,782,697	-		SO1694	0.82	+0.9
1,782,697	-		SO1694	0.82	+2.4
1,782,697	-		SO1694	0.82	+2.7
1,782,697	-		SO1694	0.82	+1.7
1,782,697	-		SO1694	0.82	-0.2
1,782,697	-		SO1694	0.82	-0.7
1,782,697	-		SO1694	0.82	-0.9
1,782,697	-		SO1694	0.82	-1.3
1,782,697	-		SO1694	0.82	+2.0
1,782,697	-		SO1694	0.82	+0.8
1,782,697	-		SO1694	0.82	+2.0
1,782,697	-		SO1694	0.82	-0.5
1,782,697	-		SO1694	0.82	-1.8
1,782,699	+		SO1694	0.82	+0.2
1,782,699	+		SO1694	0.82	+2.1
1,782,702	+		SO1694	0.82	+0.2
1,782,705	-		SO1694	0.82	-0.8
1,782,705	-		SO1694	0.82	+0.4
1,782,716	-		SO1694	0.83	+0.3
1,782,772	-		SO1694	0.85	-0.1
1,782,778	+		SO1694	0.85	+0.9
1,782,786	-		SO1694	0.85	+1.7
1,782,788	+		SO1694	0.85	+1.8
1,782,788	+		SO1694	0.85	-0.2
1,782,822	+		SO1694	0.87	+0.2
1,782,822	+		SO1694	0.87	+0.6
1,782,830	-		SO1694	0.87	+2.2
1,782,830	-		SO1694	0.87	+2.1
1,782,832	+		SO1694	0.87	-0.6
1,782,832	+		SO1694	0.87	+3.3
1,782,846	+		SO1694	0.88	-1.4
1,782,846	+		SO1694	0.88	+0.4
1,782,846	+		SO1694	0.88	+0.8
1,782,907	-		SO1694	0.90	+1.7
1,782,908	+		SO1694	0.90	-0.4
1,782,914	+				-2.6
1,782,914	+				-0.1
1,782,916	+				+0.4
1,782,916	+				-1.3
1,782,916	-				+1.5
1,782,922	-				+1.2
1,782,924	-				+0.8
1,782,924	-				+2.1
1,782,924	-				+0.7
1,782,973	+				+0.4
1,782,978	+				-0.0
1,782,983	+				+0.1
1,783,006	-				+3.3
1,783,011	+				+1.1
1,783,011	+				-0.8
1,783,012	+				+0.4
1,783,012	+				+1.8
1,783,021	+				+0.1
1,783,021	+				+0.4
1,783,021	+				+0.4
1,783,021	+				-2.3
1,783,021	+				+1.8
1,783,021	+				+0.7
1,783,021	+				+2.3
1,783,021	+				-0.1
1,783,021	+				-0.3
1,783,021	+				+0.1
1,783,029	-				+1.4
1,783,029	-				+1.6
1,783,029	-				-1.6
1,783,029	-				+1.8
1,783,031	+				-0.4
1,783,031	+				+1.2
1,783,040	-				+1.8
1,783,059	-				+1.1
1,783,067	-				+1.2
1,783,076	+				+0.5
1,783,078	-				-0.3
1,783,078	-				-2.2
1,783,080	+				-2.1
1,783,080	+				+0.3
1,783,080	+				-0.0
1,783,088	-				+1.9
1,783,088	-				-0.3
1,783,125	-				-0.2
1,783,128	+				-0.2
1,783,128	+				+1.2
1,783,137	+				+0.6
1,783,137	+				+0.1
1,783,144	+				+0.6
1,783,144	+				+1.0
1,783,144	-				-0.1
1,783,145	-				+2.3
1,783,147	+				+1.7
1,783,152	-				+1.0
1,783,152	-				+1.8
1,783,247	+				-1.9
1,783,255	-				-0.0
1,783,255	-				+0.4
1,783,255	-				-1.8
1,783,255	-				+0.3
1,783,255	-				-1.2
1,783,255	-				-4.1
1,783,264	+				-1.1
1,783,271	+				+0.8
1,783,279	-				+1.6
1,783,282	+				+0.1
1,783,282	+				+2.3
1,783,282	+				+1.2
1,783,282	+				+0.0
1,783,282	+				-1.1
1,783,290	-				-1.3
1,783,290	-				+2.0
1,783,290	-				-0.6
1,783,322	+				-0.4
1,783,325	+				+1.7
1,783,327	+				-0.3
1,783,348	+		SO1695	0.12	+1.3
1,783,348	+		SO1695	0.12	+0.3
1,783,348	+		SO1695	0.12	-0.7
1,783,348	+		SO1695	0.12	-2.4
1,783,348	+		SO1695	0.12	-0.4
1,783,348	+		SO1695	0.12	+0.7
1,783,348	+		SO1695	0.12	+1.4
1,783,349	+		SO1695	0.12	+0.4
1,783,356	-		SO1695	0.12	-0.3
1,783,356	-		SO1695	0.12	-1.6
1,783,375	+		SO1695	0.14	+0.4
1,783,442	+		SO1695	0.21	-0.3
1,783,460	-		SO1695	0.23	-0.9
1,783,476	+		SO1695	0.25	+1.5
1,783,539	-		SO1695	0.32	-0.0
1,783,585	-		SO1695	0.36	-0.6
1,783,608	+		SO1695	0.39	+1.1
1,783,627	+		SO1695	0.41	+0.9
1,783,640	-		SO1695	0.42	+0.7
1,783,640	-		SO1695	0.42	-0.1
1,783,678	-		SO1695	0.46	-3.2
1,783,752	+		SO1695	0.54	-2.9
1,783,766	+		SO1695	0.55	+0.7
1,783,802	+		SO1695	0.59	+1.3
1,783,847	+		SO1695	0.64	+0.4
1,783,855	-		SO1695	0.65	-0.4
1,783,873	-		SO1695	0.66	+1.0
1,783,873	-		SO1695	0.66	+0.5
1,783,878	-		SO1695	0.67	-0.6
1,784,031	+		SO1695	0.83	-0.0
1,784,036	+		SO1695	0.83	-0.6
1,784,036	+		SO1695	0.83	-2.3
1,784,036	+		SO1695	0.83	+1.2
1,784,039	-		SO1695	0.84	+2.6
1,784,044	-		SO1695	0.84	+1.0
1,784,123	-				-2.1
1,784,160	+				-1.0
1,784,168	+				+1.5
1,784,168	+				+0.9
1,784,176	-				-0.6
1,784,176	-				-0.6
1,784,176	-				+1.3
1,784,178	+				-3.2