Strain Fitness in Shewanella oneidensis MR-1 around SO1634

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuppS and cdsA are separated by 113 nucleotidescdsA and dxr are separated by 4 nucleotides SO1633: uppS - undecaprenyl diphosphate synthase (NCBI ptt file), at 1,714,583 to 1,715,410 uppS SO1634: cdsA - phosphatidate cytidylyltransferase (NCBI ptt file), at 1,715,524 to 1,716,288 cdsA SO1635: dxr - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (NCBI ptt file), at 1,716,293 to 1,717,483 dxr Position (kb) 1715 1716 1717Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1714.538 kb on + strandat 1714.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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1,714,538 + -3.8
1,714,541 - +4.5

Or see this region's nucleotide sequence