Strain Fitness in Shewanella oneidensis MR-1 around SO0988

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
1,015,994	+		SO0987	0.54	-1.1
1,016,015	-		SO0987	0.55	-2.6
1,016,065	+		SO0987	0.58	+4.4
1,016,071	-		SO0987	0.58	+1.6
1,016,075	+		SO0987	0.58	+0.6
1,016,145	+		SO0987	0.63	+0.2
1,016,146	-		SO0987	0.63	-2.9
1,016,153	-		SO0987	0.63	-1.3
1,016,158	-		SO0987	0.63	+1.3
1,016,158	-		SO0987	0.63	+0.8
1,016,233	-		SO0987	0.68	+1.9
1,016,368	+		SO0987	0.76	+0.5
1,016,382	+		SO0987	0.77	+0.4
1,016,410	+		SO0987	0.79	-0.5
1,016,415	-		SO0987	0.79	-1.9
1,016,437	-		SO0987	0.80	-1.2
1,016,449	-		SO0987	0.81	-1.2
1,016,494	-		SO0987	0.84	+2.8
1,016,540	-		SO0987	0.86	+0.9
1,016,612	-				+0.8
1,016,675	+				+2.1
1,016,680	+				+0.3
1,016,692	+				+0.4
1,016,702	+				+0.5
1,016,712	-				-0.6
1,016,712	-				+3.1
1,016,712	-				+1.3
1,016,859	+				-3.0
1,016,859	+				-0.6
1,016,859	+				-1.8
1,016,912	+				-0.7
1,016,994	+				-0.2
1,016,994	+				-1.9
1,017,002	-				+1.2
1,017,156	-				+1.5
1,017,192	+				+1.7
1,017,215	-				+0.0
1,017,234	+				+0.5
1,017,296	+		SO0988	0.10	+0.2
1,017,340	-		SO0988	0.11	-2.7
1,017,385	-		SO0988	0.12	+2.3
1,017,560	-		SO0988	0.16	+0.1
1,017,621	+		SO0988	0.18	+0.3
1,017,628	+		SO0988	0.18	-1.2
1,017,733	+		SO0988	0.20	+1.2
1,017,762	-		SO0988	0.21	-0.3
1,017,768	+		SO0988	0.21	-0.3
1,017,942	-		SO0988	0.25	-0.4
1,017,957	+		SO0988	0.26	+0.5
1,018,062	+		SO0988	0.28	-3.4
1,018,062	+		SO0988	0.28	-0.9
1,018,070	-		SO0988	0.28	-0.3
1,018,090	+		SO0988	0.29	-2.2
1,018,098	-		SO0988	0.29	+1.3
1,018,160	+		SO0988	0.30	-1.9
1,018,161	+		SO0988	0.30	+0.5
1,018,161	+		SO0988	0.30	-0.2
1,018,203	-		SO0988	0.31	+1.2
1,018,269	+		SO0988	0.33	-1.3
1,018,279	+		SO0988	0.33	-2.2
1,018,308	+		SO0988	0.34	-2.6
1,018,371	-		SO0988	0.35	-2.6
1,018,378	+		SO0988	0.35	+2.1
1,018,379	-		SO0988	0.35	-2.5
1,018,386	-		SO0988	0.36	-0.3
1,018,462	+		SO0988	0.37	+0.3
1,018,470	-		SO0988	0.38	-0.1
1,018,492	-		SO0988	0.38	+1.1
1,018,543	+		SO0988	0.39	-1.2
1,018,608	-		SO0988	0.41	+1.3
1,018,620	-		SO0988	0.41	-2.9
1,018,631	-		SO0988	0.41	-0.2
1,018,719	+		SO0988	0.43	+0.6
1,018,724	+		SO0988	0.43	+3.3
1,018,760	+		SO0988	0.44	-0.1
1,018,847	+		SO0988	0.46	+1.1
1,018,855	-		SO0988	0.47	-0.5
1,018,948	-		SO0988	0.49	+0.2
1,018,965	+		SO0988	0.49	-1.0
1,019,065	-				+0.8
1,019,094	+		SO0988	0.52	-0.3
1,019,241	+		SO0988	0.56	-1.1
1,019,276	+		SO0988	0.56	+0.8
1,019,294	-		SO0988	0.57	+1.6
1,019,330	-		SO0988	0.58	+1.1
1,019,340	-		SO0988	0.58	-0.1
1,019,411	-		SO0988	0.59	+0.4
1,019,487	-		SO0988	0.61	+0.5
1,019,509	+		SO0988	0.62	+0.8
1,019,515	+		SO0988	0.62	+1.1
1,019,515	+		SO0988	0.62	-0.2
1,019,523	-		SO0988	0.62	-0.2
1,019,523	-		SO0988	0.62	+0.2
1,019,523	-		SO0988	0.62	-1.2
1,019,727	-		SO0988	0.67	+0.8
1,019,757	+		SO0988	0.68	-0.8
1,019,794	+		SO0988	0.68	+1.2
1,019,816	+		SO0988	0.69	-1.7
1,019,836	-		SO0988	0.69	+0.6
1,019,836	-		SO0988	0.69	+0.6
1,019,859	-		SO0988	0.70	+0.5
1,020,195	-		SO0988	0.78	+0.6
1,020,195	-		SO0988	0.78	+0.2
1,020,383	+		SO0988	0.82	+0.8
1,020,483	-		SO0988	0.84	-1.6
1,020,497	+		SO0988	0.85	+0.5
1,020,511	-		SO0988	0.85	-1.4
1,020,605	+		SO0988	0.87	-1.0
1,020,746	+				-0.2
1,020,756	+				-1.1
1,020,764	-				-0.7
1,020,765	+				+0.2
1,020,778	+				+0.3
1,020,786	-				-2.0
1,020,786	-				+0.4
1,020,800	-				+0.4
1,020,848	+				+0.9
1,020,856	-				-0.2
1,020,899	-				-3.8
1,020,929	+				+0.4
1,020,929	+				-0.1
1,020,931	+				-1.1
1,020,931	+				+1.8
1,020,931	+				-1.5
1,020,931	+				-1.2
1,020,931	+				+0.4
1,020,937	-				-1.4
1,020,939	-				-2.0
1,020,939	-				-1.3
1,020,939	-				-0.9
1,020,949	-				+1.6
1,020,975	+				-2.9
1,020,975	+				-1.2
1,020,975	+				-1.1
1,020,982	+				+0.4
1,020,983	-				+0.8
1,020,994	+				-1.0
1,021,006	+				-1.3
1,021,081	-				+1.2
1,021,083	+				+0.6
1,021,186	+				+0.4
1,021,186	+				+0.4
1,021,194	-				+1.7
1,021,194	-				-2.2
1,021,207	-				+2.8
1,021,207	-				+0.8
1,021,241	+				+1.9
1,021,293	+				+0.6
1,021,301	-				+0.6
1,021,364	+				+0.3
1,021,364	+				-0.0
1,021,372	-				+0.3
1,021,434	+				+1.6
1,021,436	+				+0.0
1,021,436	+				+0.0
1,021,436	+				+2.4
1,021,436	+				-0.2
1,021,441	+				-0.8
1,021,449	-				+4.4
1,021,476	+				-0.4
1,021,482	+		SO0989	0.10	+2.1
1,021,490	-		SO0989	0.11	+0.2
1,021,508	+		SO0989	0.13	-0.3
1,021,508	+		SO0989	0.13	-0.3
1,021,525	+		SO0989	0.15	+1.5
1,021,589	+		SO0989	0.22	-2.2
1,021,594	+		SO0989	0.23	-0.3
1,021,597	-		SO0989	0.23	+0.6
1,021,599	+		SO0989	0.23	-1.4
1,021,599	+		SO0989	0.23	-0.1
1,021,698	-		SO0989	0.34	+0.5
1,021,698	-		SO0989	0.34	+0.8
1,021,698	-		SO0989	0.34	-0.0
1,021,698	-		SO0989	0.34	-3.2
1,021,750	-		SO0989	0.40	-1.0
1,021,793	-		SO0989	0.45	+0.5
1,021,894	-		SO0989	0.56	+1.6
1,021,911	+		SO0989	0.58	+0.6
1,022,049	+		SO0989	0.74	-1.0
1,022,057	-		SO0989	0.75	+0.8