Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0793 and SO0795 are separated by 635 nucleotides SO0795 and SO0796 are separated by 76 nucleotides
SO0793: SO0793 - hypothetical protein (NCBI ptt file), at 806,082 to 806,369
SO0793
SO0795: SO0795 - conserved hypothetical protein (NCBI ptt file), at 807,005 to 808,783
SO0795
SO0796: SO0796 - GGDEF family protein (NCBI ptt file), at 808,860 to 809,771
SO0796
Position (kb) 807
808
809 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 806.142 kb on + strand, within SO0793 at 806.176 kb on + strand, within SO0793 at 806.178 kb on - strand, within SO0793 at 806.178 kb on - strand, within SO0793 at 806.178 kb on - strand, within SO0793 at 806.178 kb on - strand, within SO0793 at 806.203 kb on - strand, within SO0793 at 806.205 kb on - strand, within SO0793 at 806.205 kb on - strand, within SO0793 at 806.286 kb on + strand, within SO0793 at 806.294 kb on - strand, within SO0793 at 806.294 kb on - strand, within SO0793 at 806.351 kb on + strand at 806.351 kb on + strand at 806.351 kb on + strand at 806.359 kb on - strand at 806.363 kb on + strand at 806.371 kb on - strand at 806.521 kb on + strand at 806.613 kb on + strand at 806.622 kb on - strand at 806.670 kb on - strand at 806.787 kb on + strand at 806.922 kb on - strand at 807.033 kb on + strand at 807.041 kb on - strand at 807.062 kb on + strand at 807.137 kb on + strand at 807.138 kb on - strand at 807.145 kb on - strand at 807.158 kb on + strand at 807.212 kb on + strand, within SO0795 at 807.212 kb on + strand, within SO0795 at 807.289 kb on + strand, within SO0795 at 807.307 kb on + strand, within SO0795 at 807.574 kb on - strand, within SO0795 at 807.610 kb on - strand, within SO0795 at 807.745 kb on - strand, within SO0795 at 807.830 kb on + strand, within SO0795 at 807.903 kb on - strand, within SO0795 at 807.917 kb on + strand, within SO0795 at 807.925 kb on - strand, within SO0795 at 807.941 kb on + strand, within SO0795 at 808.012 kb on - strand, within SO0795 at 808.036 kb on + strand, within SO0795 at 808.137 kb on - strand, within SO0795 at 808.137 kb on - strand, within SO0795 at 808.137 kb on - strand, within SO0795 at 808.159 kb on - strand, within SO0795 at 808.161 kb on - strand, within SO0795 at 808.249 kb on - strand, within SO0795 at 808.295 kb on - strand, within SO0795 at 808.322 kb on - strand, within SO0795 at 808.358 kb on - strand, within SO0795 at 808.431 kb on + strand, within SO0795 at 808.431 kb on + strand, within SO0795 at 808.481 kb on - strand, within SO0795 at 808.563 kb on - strand, within SO0795 at 808.571 kb on + strand, within SO0795 at 808.579 kb on - strand, within SO0795 at 808.646 kb on + strand at 808.665 kb on + strand at 808.695 kb on + strand at 808.703 kb on - strand at 808.753 kb on + strand at 808.834 kb on + strand at 808.867 kb on + strand at 808.936 kb on - strand at 809.086 kb on - strand, within SO0796 at 809.096 kb on - strand, within SO0796 at 809.312 kb on - strand, within SO0796 at 809.320 kb on + strand, within SO0796 at 809.332 kb on + strand, within SO0796 at 809.372 kb on + strand, within SO0796 at 809.379 kb on - strand, within SO0796 at 809.407 kb on + strand, within SO0796 at 809.496 kb on + strand, within SO0796 at 809.583 kb on + strand, within SO0796
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 806,142 + SO0793 0.21 -0.1 806,176 + SO0793 0.33 -0.5 806,178 - SO0793 0.33 +1.9 806,178 - SO0793 0.33 +1.0 806,178 - SO0793 0.33 -0.5 806,178 - SO0793 0.33 -1.4 806,203 - SO0793 0.42 +3.3 806,205 - SO0793 0.43 -0.2 806,205 - SO0793 0.43 +1.9 806,286 + SO0793 0.71 +0.7 806,294 - SO0793 0.74 +1.3 806,294 - SO0793 0.74 -0.5 806,351 + -1.1 806,351 + +1.8 806,351 + -0.1 806,359 - -0.3 806,363 + +1.1 806,371 - -2.1 806,521 + -2.3 806,613 + -0.7 806,622 - +0.0 806,670 - -4.2 806,787 + +1.4 806,922 - -2.8 807,033 + +1.5 807,041 - -1.0 807,062 + +0.2 807,137 + -4.1 807,138 - -2.1 807,145 - -1.0 807,158 + +1.8 807,212 + SO0795 0.12 -1.2 807,212 + SO0795 0.12 +0.5 807,289 + SO0795 0.16 +1.4 807,307 + SO0795 0.17 +0.1 807,574 - SO0795 0.32 -3.2 807,610 - SO0795 0.34 +1.3 807,745 - SO0795 0.42 +0.3 807,830 + SO0795 0.46 -2.0 807,903 - SO0795 0.50 +1.1 807,917 + SO0795 0.51 -1.9 807,925 - SO0795 0.52 +1.3 807,941 + SO0795 0.53 +1.0 808,012 - SO0795 0.57 -3.6 808,036 + SO0795 0.58 +0.1 808,137 - SO0795 0.64 +0.1 808,137 - SO0795 0.64 -0.4 808,137 - SO0795 0.64 -1.4 808,159 - SO0795 0.65 +0.3 808,161 - SO0795 0.65 -0.6 808,249 - SO0795 0.70 -2.3 808,295 - SO0795 0.73 +2.8 808,322 - SO0795 0.74 +7.3 808,358 - SO0795 0.76 +1.4 808,431 + SO0795 0.80 -1.6 808,431 + SO0795 0.80 -1.1 808,481 - SO0795 0.83 +0.2 808,563 - SO0795 0.88 +2.6 808,571 + SO0795 0.88 -1.0 808,579 - SO0795 0.88 +0.9 808,646 + +0.7 808,665 + +0.1 808,695 + -0.7 808,703 - +0.4 808,753 + -0.7 808,834 + +0.2 808,867 + +0.5 808,936 - -0.1 809,086 - SO0796 0.25 +0.8 809,096 - SO0796 0.26 +1.6 809,312 - SO0796 0.50 +0.4 809,320 + SO0796 0.50 -0.3 809,332 + SO0796 0.52 -1.1 809,372 + SO0796 0.56 -1.9 809,379 - SO0796 0.57 +0.5 809,407 + SO0796 0.60 +2.9 809,496 + SO0796 0.70 -1.0 809,583 + SO0796 0.79 +0.5
Or see this region's nucleotide sequence